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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcaagttgttacttattcattgaataatgtgtgaatttattgcctcattcaactcgtgatacatttttgtaatggtgattcttgtctctgttttgtgcagCTCTGGAGCTTATAGAACATCTCCGTGCAATGGGTGAAACAAATGCTCTTTATCAAATGAACAAT

Basic information

species Glycine max
transcript GLYMA04G43650.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G43650.1 (Glycine max), 3'ss of exon 7
lower sequence: AT1G22800.1 (Arabidopsis thaliana), 3'ss of exon 8
tcaagttgttacttattcattgaataatgtgtgaatttattgcctcattcaactcgtgatacatttttgtaatggtgattcttgtctctgtttt---gtgcagCTCTGGAGCTTATAGAACATCTCCGTGCAATGGGTGAAACAAATGCTCTTTATCAAATGAACAAT-----------------------------------
  ||  |||| |  | |  ||   || |   |   |||    |  | |  | ||    | |  | ||| | ||     |||| || | | | ||      ||||  |||| |||||||| ||||| ||||| ||||||||||| |||||||||    | |  |||||                                    
gtaaactgttcc--acttttttcctacttcatcg-tttgcaacaacgtgtatcttccaagaattatttctgatttgccttctcgtttatatctttctactcagCGATGGATCTTATAGAGCATCTTCGTGCGATGGGTGAAACCAATGCTCTTCTCGAGAGAAACAAGATTTTGAATCGTGAAACTGCTGTTGCCACGGCAGC

upper sequence: GLYMA04G43650.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv18s0001g06830.t01 (Vitis vinifera), 3'ss of exon 8
tcaagttgttacttattcattgaataatgtgtgaatttattgcctcattcaactcgtgatacatttttgtaatggtgattcttgtctctgttt-tgtgcagCTCTGGAGCTTATAGAACATCTCCGTGCAATGGGTGAAACAAATGCTCTTTATCAAATGAACAAT
|  | || ||| ||||  ||| | | |      || |||       | ||||  | |  ||  |   | ||    | |    ||  | |   | | || |||||| || || ||||||||||| ||| ||||||||||||| |||||||||   || |  | ||||
tgtaattatta-ttatatattaacttagaatataagttaaaaataaaatcaatgcatcttaattacctttatgtctcacatgtgcttttaactgtatgtagCTCTTGACCTAATAGAACATCTGCGTTCAATGGGTGAAACTAATGCTCTTCTACAGAAAAGCAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cattcaactcgtgatacatttttgtaatggtgattcttgtctctgttttgtgcagCTCTGGAGCTTATAGAACATCTCCGTGCAATGGGTGAAACAAATGCTCTTTATCAAATGAACAAT
                                 ttcttgtctctgtttt  CT-rich tract
             atacatttttgtaat  TA-rich tract