1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaagttgcactataatgctatgaggttgtagctataacatttcaatgaaaatatttacttaagcaggcaatgtcatcttgatatatattagtcctgcagGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTAGTTCAAGTGCCAAAAATGTTGTCAGTGCTTAGGAAAGATTGGGCTCCTC
species | Glycine max |
transcript | GLYMA04G43390.3 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATG GTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTAEST: gi|254340902|gb|GR854630.1|GR854630
genomic: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATGgtataaatac ... agtcctgcagGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTA
EST: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATG GTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTAEST: gi|254340903|gb|GR854631.1|GR854631
genomic: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATGgtataaatac ... agtcctgcagGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTA
EST: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATG GTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTAEST: gi|31561978|gb|CD487816.1|CD487816
genomic: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATGgtataaatac ... agtcctgcagGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTA
EST: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATG GTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTAEST: gi|254326214|gb|GR840806.1|GR840806
genomic: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATGgtataaatac ... agtcctgcagGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTA
EST: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAA-TG GTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTG-ATGTGAAACTAEST: gi|298187350|gb|HO034499.1|HO034499
genomic: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATGgtataaatac ... agtcctgcagGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTA
EST: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATG GTAGAGCACAAAATTCEST: gi|298163079|gb|HO011812.1|HO011812
genomic: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATGgtataaatac ... agtcctgcagGTAGAGCACAAAATTC
EST: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATG GTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTAEST: gi|120533661|gb|EH261794.1|EH261794
genomic: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATGgtataaatac ... agtcctgcagGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTA
EST: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATG GTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTAEST: gi|208059065|gb|GD856143.1|GD856143
genomic: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATGgtataaatac ... agtcctgcagGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTA
EST: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATG GTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTA
genomic: TCTATCTTGCTGCTGCAGTGTCTGACTATTATGTTCCTTGGAAGGAAATGgtataaatac ... agtcctgcagGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTA
atgaaaatatttacttaagcaggcaatgtcatcttgatatatattagtcctgcagGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTAGTTCAAGTGCCAAAAATGTTGTCAGTGCTTAGGAAAGATTGGGCTCCTC
tcttgat putative branch site (score: 4)
atcttgatatatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaagttgcactataatgctatgaggttgtagctataacatttcaatgaaaatatttacttaagcaggcaatgtcatcttgatatatattagtcctgcagGTAGAGCACAAAATTCAGTCAGGATCATCTCACCTTTTGGATGTGAAACTAGTTCAAGTGCCAAAAATGTTGTCAGTGCTTAGGAAAGATTGGGCTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC