1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tggataaaacgagattaatttaaggcataaatctaagctttatcttctgaaaagatacatttcttggtcacgtagtctcagcatggatttgaacttgcagCTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCCCTATCCAATTGATATGGAGTTTCGGCCACCTTGCATGGTTCTATCAACC
species | Glycine max |
transcript | GLYMA04G42840.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GCCCCTTTTACTCACACTTCAACTTTTGCTAAGGGATGGAGTGTTCCCAG CTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCCEST: gi|16349020|gb|BI974615.1|BI974615
genomic: GCCCCTTTTACTCACACTTCAACTTTTGCTAAGGGATGGAGTGTTCCCAGgttttgtgtt ... gaacttgcagCTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCC
EST: TGGAGTGTTCCCAG CTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCCEST: gi|23728713|gb|BU762418.1|BU762418
genomic: TGGAGTGTTCCCAGgttttgtgtt ... gaacttgcagCTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCC
EST: GCCCCTTTTACTCACACTTCAACTTTTGCTAAGGGATGGAGTGTTCCCAG CTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCCEST: gi|15199646|gb|BI423937.1|BI423937
genomic: GCCCCTTTTACTCACACTTCAACTTTTGCTAAGGGATGGAGTGTTCCCAGgttttgtgtt ... gaacttgcagCTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCC
EST: GCCCCTTTTACTCACACTTCAACTTTTGCTAAGGGATGGAGTGTTCCCAG CTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCCEST: gi|17022892|gb|BM093926.1|BM093926
genomic: GCCCCTTTTACTCACACTTCAACTTTTGCTAAGGGATGGAGTGTTCCCAGgttttgtgtt ... gaacttgcagCTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCC
EST: GCCCCTTTTACTCACACTTCAACTTTTGCTAAGGGATGGAGTGTTCCCAG CTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCCEST: gi|7686535|gb|AW757183.1|AW757183
genomic: GCCCCTTTTACTCACACTTCAACTTTTGCTAAGGGATGGAGTGTTCCCAGgttttgtgtt ... gaacttgcagCTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCC
EST: GCCCCTTTTACTCACACTTCAACTTTTGCTAAGGGATGGAGTGTTCCCAG CTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCC
genomic: GCCCCTTTTACTCACACTTCAACTTTTGCTAAGGGATGGAGTGTTCCCAGgttttgtgtt ... gaacttgcagCTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCC
tctgaaaagatacatttcttggtcacgtagtctcagcatggatttgaacttgcagCTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCCCTATCCAATTGATATGGAGTTTCGGCCACCTTGCATGGTTCTATCAACC
atacattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggataaaacgagattaatttaaggcataaatctaagctttatcttctgaaaagatacatttcttggtcacgtagtctcagcatggatttgaacttgcagCTTGGTGAAATTTTTGACACCTGCATCTGGCCTACAAGGATACTGGGACCCCTATCCAATTGATATGGAGTTTCGGCCACCTTGCATGGTTCTATCAACC
-ggataaaa
- - - - - - - - - - - - - - - - - - - - - - - - -aaaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcatgga