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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatccattacttgatatcttaatattgtcacttgttggcatttgcataaagtgactttttttttttttttttgctgattggtgtattctgttttttgtagAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTCAA

Basic information

species Glycine max
transcript GLYMA04G41500.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G41500.1 (Glycine max), 3'ss of exon 7
lower sequence: AT5G53430.1 (Arabidopsis thaliana), 3'ss of exon 6
gtatatccattacttgatatcttaatattgtcacttgttggcatttgcataaagtgactttttttttttttttttgctgattggtgtattctgttttttgtagAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTCAA
                | || || || |||    ||||     ||  |||    |  |  ||  |||  | | |||  |||   | |  | |||| | || || || | |  |  || ||||| || || || || |||| | | || |||||||||||| |||| ||||||||||||||| |  |||||  |||
--------------gtacatgttcatgttgctctttgtcaaatttatcat----tcccaattactttcatgtattga-gatcaatttcatttgttatctgaagGATTTGGGGGAAACAGATTACTATTGTCCCACATGCAGAACAAAATTTGATTTTGAGCTATCAGATTCAGAAAAACCAGACTCAAAATCCAA

upper sequence: GLYMA04G41500.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv16s0098g00350.t01 (Vitis vinifera), 3'ss of exon 7
-------------------------gtatatccattacttgatatcttaat-attgtcacttgttggcatt---tgcataaagtgactttttttttttttttttgctgattggtgtattctgttttttgtagAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTCAA
                           | ||   |   ||| | | || |  |    ||||| |     ||   ||||| |||  |    || |    || |   |||| ||   ||||   |||||  ||||||||||  |  |||||||||||||||||| |||||||||| |||||| ||||||| || || |||||||||| |   ||||| ||||||||
gttggctcatcacagttccatctccaaacattattcttttgttttttttaccacaaccacttatcatttttaagtgcatgaaggaaaaaattgtagacttct---ctgactgagttatttccttttt--tagAATCTTGGGGCTACTGATTATTACTGCCCTGCTTGCAAAGCAAAGTTTAATTTTGAATTGTCAGATTCAGAAAGATGGCAGCCTAAAGTCAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaagtgactttttttttttttttttgctgattggtgtattctgttttttgtagAATCTTGAAGGCACTGATTATTACTGCCCTACTTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAACCACAGCCAAAAGTCAA
                          tgctgat  putative branch site (score: 3)
                                        ttctgtttttt  putative PPT
          tttttttttttttttt  TA-rich tract