1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaatgtttttctgttcatgatgcctattacatgtattagaagatgaatgaccatagtgaactaacaatgcttgttacctttctaatggtgctgtatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATCGACAAGAAG
species | Glycine max |
transcript | GLYMA04G40750.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGG TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATCEST: gi|9203628|gb|BE329852.1|BE329852
genomic: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
EST: ACCTTCAAAAACTGCCATTGCACGCGGTCAATCCAACATTTTTGCCCAGG TCTGAAGATGAAAGGGANATGTGCTCAAGAACAATCTATTGCACAAATATCEST: gi|193540284|gb|FK494802.1|FK494802
genomic: ACCTTCAAAAACTGCCATTGCAC-CGGTCAATCCAACATTTTTGCCCAGGgtaatgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
EST: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGG TCTGAAGATGAAAGGGAGATGTGCTCAAEST: gi|58018945|gb|CX705687.1|CX705687
genomic: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAA
EST: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGG TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATCEST: gi|58019174|gb|CX705916.1|CX705916
genomic: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
EST: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGG TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATCEST: gi|151412507|gb|EV282319.1|EV282319
genomic: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
EST: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGG TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATCEST: gi|193371147|gb|FK337388.1|FK337388
genomic: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
EST: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGG TCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
genomic: TACCTTCAAAAACTGCCATTGCACCGGTCAATCCAACATTTTTGCCCAGGgtaatgtttt ... tatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATC
gaccatagtgaactaacaatgcttgttacctttctaatggtgctgtatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATCGACAAGAAG
tatttctc CT-rich tract
tttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgtttttctgttcatgatgcctattacatgtattagaagatgaatgaccatagtgaactaacaatgcttgttacctttctaatggtgctgtatttctcagTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATCTATTGCACAAATATCGACAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG