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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctaactttctattctacagaatgtatacttattctggcatattttcataataaatgtagttttcatgtatatcactcatactatttgttctctatttagGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC

Basic information

species Glycine max
transcript GLYMA04G40740.3
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21601642|gb|BQ611973.1|BQ611973
EST:     GCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAG                         GGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
genomic: GCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGgtacaccttc ... ctctatttagGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
EST: gi|193539697|gb|FK498639.1|FK498639
EST:     GCGAAAAGCTGGTGACGTGTGCTTTGCTGAGGTTTCCCGTGATAGTGAAG                         GGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCC
genomic: GCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGgtacaccttc ... ctctatttagGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
EST: gi|207762279|gb|GD731600.1|GD731600
EST:     GCGAAAAGCTGGTGACGTGTGCTTTGCTGAGGTTTCCCGTGATAGTGAAG                         GGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCC
genomic: GCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGgtacaccttc ... ctctatttagGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
EST: gi|193325939|gb|FK291022.1|FK291022
EST:     GCGAAAAGCTGGTGACGTGTGCTTTGCTGAGGTTTCCCGTGATAGTGAAG                         GGACTTTTGGCATTGTTGATTACACTAATTATGACGACATGAAGTATGCC
genomic: GCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGgtacaccttc ... ctctatttagGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
EST: gi|192301101|gb|FG990141.1|FG990141
EST:     GCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAG                         GGACTCTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
genomic: GCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGgtacaccttc ... ctctatttagGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
EST: gi|193350079|gb|FK315753.1|FK315753
EST:     GCGAAAAGCTGGTGACGTGTGCTTTGCTGAGGTTTCCCGTGATAGTGAAG                         GGACTTTTGGCATTGTTGATTACACTAA
genomic: GCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAGgtacaccttc ... ctctatttagGGACTTTTGGCATTGTTGATTACACTAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcataataaatgtagttttcatgtatatcactcatactatttgttctctatttagGGACTTTTGGCATTGTTGATTACACTAATTATGATGACATGAAGTATGCC
                                       tttgttctctattt  CT-rich tract
     ataaatgtagtttt  TA-rich tract