1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatcaaagtgttcatacttatacactttactaaaattgttaccacctctatatgttatgaatatttggtttcagGATCATATGCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAG
species | Glycine max |
transcript | GLYMA04G40740.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTCCCATCTTCTGCATCTTGGCAAGATTTGAAG GATCATATGCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATEST: gi|193539697|gb|FK498639.1|FK498639
genomic: CTCCCATCTTCTGCATCTTGGCAAGATTTGAAGgtatcaaagt ... ttggtttcagGATCATATGCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGAT
EST: TTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG GATCATATGCGAAAAGCTGGTGACGTGTGCTTTGCTGAGGTTTCCCGTGATEST: gi|207762279|gb|GD731600.1|GD731600
genomic: TTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGgtatcaaagt ... ttggtttcagGATCATATGCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGAT
EST: TTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG GATCATATGCGAAAAGCTGGTGACGTGTGCTTTGCTGAGGTTTCCCGTGATEST: gi|193325939|gb|FK291022.1|FK291022
genomic: TTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGgtatcaaagt ... ttggtttcagGATCATATGCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGAT
EST: TTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG GATCATATGCGAAAAGCTGGTGACGTGTGCTTTGCTGAGGTTTCCCGTGATEST: gi|193350079|gb|FK315753.1|FK315753
genomic: TTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGgtatcaaagt ... ttggtttcagGATCATATGCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGAT
EST: TTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAG GATCATATGCGAAAAGCTGGTGACGTGTGCTTTGCTGAGGTTTCCCGTGAT
genomic: TTATTGTTCGTGGACTCCCATCTTCTGCATCTTGGCAAGATTTGAAGgtatcaaagt ... ttggtttcagGATCATATGCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGAT
atacactttactaaaattgttaccacctctatatgttatgaatatttggtttcagGATCATATGCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAG
tactaaa putative branch site (score: 1)
tatatgttatgaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatcaaagtgttcatacttatacactttactaaaattgttaccacctctatatgttatgaatatttggtttcagGATCATATGCGAAAAGCTGGGGACGTGTGTTTTGCTGAGGTTTCCCGTGATAGTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG