1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ttaaatatagttttcaatgtggtgtctgtgatcattatatatattttgcaaaggagcaactaaaggtgcattactgatgggctttgtttcttttatgcagCAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAATAAGAGCAAGCAACAGCTTTCCAGTGGATAACAATTGCAGTTGCAGTGA
species | Glycine max |
transcript | GLYMA04G40290.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CATATCCTACTGTAAAGCTGATTCTGATGATTCATTGTCTGAAGGAAATG CAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAAEST: gi|193363999|gb|FK332605.1|FK332605
genomic: CATATCCTACTGTAAAGCTGATTCTGATGATTCATTGTCTGAAGGAAATGgtactttctg ... ttttatgcagCAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAA
EST: GTCTGAAGGAAATG CAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAAEST: gi|26047606|gb|CA784335.1|CA784335
genomic: GTCTGAAGGAAATGgtactttctg ... ttttatgcagCAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAA
EST: CATATCCTACTGTAAAGCTGATTCTGATGATTCATTGTCTGAAGGAAATG CAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAAEST: gi|214008186|gb|DB988531.1|DB988531
genomic: CATATCCTACTGTAAAGCTGATTCTGATGATTCATTGTCTGAAGGAAATGgtactttctg ... ttttatgcagCAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAA
EST: CTACTGTAAAGCTGATTCTGATGATTCATACACTGAAGGAAATG CAGGTTCCATCAACGTCAGCAACAAT-GTAACTGGCAAGTGTCTGGCCAAAEST: gi|207822939|gb|GD794832.1|GD794832
genomic: CTACTGTAAAGCTGATTCTGATGATTCATTGTCTGAAGGAAATGgtactttctg ... ttttatgcagCAGGTTCCATCAACGTCAGCAAC-ATCTTAACTGGCAAGTGTCTGGCCAAA
EST: ATCCTACTGTAAAGCTGATTCTGATGATTCATTGTCTGAAGGAAATG CAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAAEST: gi|15287792|gb|BI471683.1|BI471683
genomic: ATCCTACTGTAAAGCTGATTCTGATGATTCATTGTCTGAAGGAAATGgtactttctg ... ttttatgcagCAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAA
EST: CATATCCTACTGTAAAGCTGATTCTGATGATTCATTGTCTGAAGGAAATG CAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAAEST: gi|193730371|gb|FK663469.1|FK663469
genomic: CATATCCTACTGTAAAGCTGATTCTGATGATTCATTGTCTGAAGGAAATGgtactttctg ... ttttatgcagCAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAA
EST: CATATCCTACTGTAAAGCTGATTCTGATGATTCATTGTCTGAAGGAAATG CAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAAEST: gi|193682161|gb|FK622923.1|FK622923
genomic: CATATCCTACTGTAAAGCTGATTCTGATGATTCATTGTCTGAAGGAAATGgtactttctg ... ttttatgcagCAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAA
EST: CATATCCTACTGTAAAGCTGATTCTGATGATTCATTGTCTGAAGGAAATG CAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAA
genomic: CATATCCTACTGTAAAGCTGATTCTGATGATTCATTGTCTGAAGGAAATGgtactttctg ... ttttatgcagCAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAA
ttgcaaaggagcaactaaaggtgcattactgatgggctttgtttcttttatgcagCAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAATAAGAGCAAGCAACAGCTTTCCAGTGGATAACAATTGCAGTTGCAGTGA
tactgat putative branch site (score: 2)
ctttgtttcttttat putative PPT
tttgtttcttttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttaaatatagttttcaatgtggtgtctgtgatcattatatatattttgcaaaggagcaactaaaggtgcattactgatgggctttgtttcttttatgcagCAGGTTCCATCAACGTCAGCAACATCTTAACTGGCAAGTGTCTGGCCAAAATAAGAGCAAGCAACAGCTTTCCAGTGGATAACAATTGCAGTTGCAGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - -tgtggtg
- - - - - - - - - - - - - - - - - - - - - - - tgcaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgatggg