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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttttagatgaccttttcttatccctagtaattcctaaggttggtgttgtatttgttgacaagattcatatccttgttatatggttttgcatcttgttataacacgctatttcatatcttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAGTTTTAGAAACTATGTTCTAGGGGGAACTACCCTGAATTGAGAATTTTTG

Basic information

species Glycine max
transcript GLYMA04G37120.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017474|gb|CX704216.1|CX704216
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTCCAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|19346370|gb|BM891250.1|BM891250
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCTTTTAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|208316901|gb|GE112756.1|GE112756
EST:     TGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCAAGGCAACTGGGAGAATTGCAAG
genomic: TGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|31307073|gb|CD392276.1|CD392276
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|31462978|gb|CD405006.1|CD405006
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACCATCGGTGGGATTTGGAGATCATGGCCACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|8401588|gb|BE057152.1|BE057152
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|193348781|gb|FK316905.1|FK316905
EST:     ATTCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: A-TCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|192329979|gb|FK021565.1|FK021565
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|213590824|gb|DB975637.1|DB975637
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|22523638|gb|BU082449.1|BU082449
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|8285165|gb|BE022724.1|BE022724
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|58015143|gb|CX701885.1|CX701885
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|254318263|gb|GR832431.1|GR832431
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|10846111|gb|BF069088.1|BF069088
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|254314708|gb|GR829701.1|GR829701
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|13480760|gb|BG510103.1|BG510103
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|193404940|gb|FK373367.1|FK373367
EST:     CCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|20814441|gb|BQ298919.1|BQ298919
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|254314709|gb|GR829702.1|GR829702
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|31312571|gb|CD397774.1|CD397774
EST:     CATCAATGAATATGTCCAGATTTGTGACATTGTGGCCTTCAATAAAATAT                         TAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|208091924|gb|GD890515.1|GD890515
EST:     TGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCAAGGCAACTGGGAGAATTGCAAG
genomic: TGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|6964003|gb|AW432696.1|AW432696
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATGTGGAGATCATGGCAACTGCGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|6848971|gb|AW351261.1|AW351261
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|15813987|gb|BI786262.1|BI786262
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|192295190|gb|FG986909.1|FG986909
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAA--TAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCA-CTGGGAGAATTGCA-G
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|26058029|gb|CA800943.1|CA800943
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|42722502|gb|CK768401.1|CK768401
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|151396946|gb|EV266819.1|EV266819
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|151409150|gb|EV278958.1|EV278958
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCG
EST: gi|193410792|gb|FK376359.1|FK376359
EST:     CAATGAATATTGTTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CAATGAATA-TG-TCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|31463360|gb|CD405388.1|CD405388
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|208077947|gb|GD874065.1|GD874065
EST:     TGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCAAGGCAACTGGGAGAATTGCAAG
genomic: TGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
EST: gi|11687926|gb|BF595602.1|BF595602
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTG
EST: gi|7692495|gb|AW760600.1|AW760600
EST:     CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATAT                         AAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG
genomic: CATCAATGAATATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATgtaagttttt ... cttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttatatggttttgcatcttgttataacacgctatttcatatcttattacagAAACTACAATCGGTGGGATTTGGAGATCATGGCAACTGGGAGAATTGCAAGTTTTAGAAACTATGTTCTAGGGGGAACTACCCTGAATTGAGAATTTTTG
                        ttataac  putative branch site (score: 2)
                                            tcttatt  putative PPT
                                   tatttcatatcttatt  TA-rich tract