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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacataaatattcagtaataatgctatgattttttaattgtgctgataatgccaactgattacttgatattggcaatggttttgtagGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGCTGTATATTGGTTGAATTATGCACT

Basic information

species Glycine max
transcript GLYMA04G36360.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36360.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os12g27520.1 (Oryza sativa), 3'ss of exon 8
gtacataaatattcagtaataatgctatgattttttaattgtgctgataatgccaactgattact-tgatattggcaatggttttgt--agGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGCTGTATATTGGTTGAATTATGCACT
     ||  | |   |   || ||| | |  ||     |     |||| |||     || ||||  |   | ||||  | ||| |||  ||||||||| ||||| || || ||||||||||||||||| || |||||| |||||||  ||||||| 
----gtatttgtcttgcc-tagtgcaaagccttccctgtcagcgtgattatggtttatgtttacgattggaatggctgttgttctgttcagGACTTGGATGGAGTTACCCCTGTGATATATGGAGTGTTGGTTGTATACTGGTTGAGCTATGCACG

upper sequence: GLYMA04G36360.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 3'ss of exon 8
----------------------------------------------------------------gtacataaatattcagtaataatgctatgattttttaatt--------------gtgctgataatgcca-actgattact-tgatattggcaatggttttgtagGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGCTGTATATTGGTTGAATTATGCACT
                                                                 |    || || |  |  | |   |     | |||||||               |||   ||| | ||   ||||| | |  | | ||    ||| || |||||| ||||| ||||| ||||||||||||||||||||||| || ||||| ||||| || |||||||| 
gtatgccatcaaatatctgccattgtttttctgttgtcatgagtcagtatggtgttctaccattctttcaaattagttggccagatcacaggtttcttttaatgcccaaggaagacaagtggatatagttccttgctgatgaatacgctttttttcatgtttatgtagGGCTTGGATGGAGTTATCCATGTGATATATGGAGTGTTGGATGTATCTTGGTGGAGTTATGCACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58021621|gb|CX708362.1|CX708362
EST:     GACTTACATTGTGTCAACTCGTCATTATAGGGCACCTGAAGTTATCCTTG                         GACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGCTGTATATTGG
genomic: GACTTACATTGTGTCAACTCGTCATTATAGGGCACCTGAAGTTATCCTTGgtacataaat ... ggttttgtagGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGCTGTATATTGG
EST: gi|208318486|gb|GE110295.1|GE110295
EST:     GACTTACATTGTGTCAACTCGTCATTATAGGGCACCTGAAGTTATCCTTG                         GACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGCTGTATATTGG
genomic: GACTTACATTGTGTCAACTCGTCATTATAGGGCACCTGAAGTTATCCTTGgtacataaat ... ggttttgtagGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGCTGTATATTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaattgtgctgataatgccaactgattacttgatattggcaatggttttgtagGACTTGGGTGGAGCTATCCATGTGATATATGGAGTGTGGGCTGTATATTGGTTGAATTATGCACT
                               ttgatatt  TA-rich tract