1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...atttgctgcctctcatgttacttgcctttaccatcttatgtgcacgtcctgcttgcttctttacgtgttgttccaacgtttttctgttttcacttcacagGATGGTTGCATCAGTTATGAGGAGTTTGTGGCAATGATGAAAACTGGAACTGACTGGAGAAAAGCATCCAGGCAATATTCAAGGGAGAGATTCAAGAGTT
species | Glycine max |
transcript | GLYMA04G34440.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGATGCTGATGTATTGAATGACATCATGCGGGAAGTTGACACTGACAAG GATGGTTGCATCAGTTATGAGGAGTTTGTGGCAATGATGAAAACTGGAACT
genomic: CTGATGCTGATGTATTGAATGACATCATGCGGGAAGTTGACACTGACAAGgtttgaattt ... cacttcacagGATGGTTGCATCAGTTATGAGGAGTTTGTGGCAATGATGAAAACTGGAACT
gtcctgcttgcttctttacgtgttgttccaacgtttttctgttttcacttcacagGATGGTTGCATCAGTTATGAGGAGTTTGTGGCAATGATGAAAACTGGAACTGACTGGAGAAAAGCATCCAGGCAATATTCAAGGGAGAGATTCAAGAGTT
tttttctgttttcact CT-rich tract
ttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgctgcctctcatgttacttgcctttaccatcttatgtgcacgtcctgcttgcttctttacgtgttgttccaacgtttttctgttttcacttcacagGATGGTTGCATCAGTTATGAGGAGTTTGTGGCAATGATGAAAACTGGAACTGACTGGAGAAAAGCATCCAGGCAATATTCAAGGGAGAGATTCAAGAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - tgcctct
- - - - - - - - - tacttgc
- - - - - - - - - - - - - - - - - - tatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgtt