1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcaatggcattgtatgaaactatgattcatgtaaccaaccttgcttagtgggacaaggcttttgttattgacttgtaactcctgaactcgttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCT
species | Glycine max |
transcript | GLYMA04G26840.1 |
intron # | 7 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: GCTTGCCTCCTTCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCA ATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGTATCACAGACACEST: gi|22931617|gb|BU548756.1|BU548756
genomic: GCTTGCCTCCTTCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCAgtatcctttg ... ttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGTATCACAGACAC
EST: GCTTGNNTNNNNCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCA ATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGTATCACAGACAC
genomic: GCTTGCCTCCTTCTTCATACTATGTGCCAATATTTCCGACCGAAGTTTCAgtatcctttg ... ttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGTATCACAGACAC
tagtgggacaaggcttttgttattgacttgtaactcctgaactcgttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCT
ctcctgaac putative branch site
ttactttt putative PPT
ttttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaatggcattgtatgaaactatgattcatgtaaccaaccttgcttagtgggacaaggcttttgttattgacttgtaactcctgaactcgttacttttagATATCGAATAAAGATAATTCCTATGGGTAGCTACCCTCGTATCACAGACACCAATAACAGTACCTACGAGCT
- - - - - tgtatga
- - - - - - - - - - - - - -catgtaa
- - - - - - - - - - - - - - - - - - - ccttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctga