Sequence
atgc intronic sequence ATGC exonic sequencegtatgtcttttaactttagctggctgaacttttacaatttacacaaatcctcctttgaaatgattttctcttctttttttctccccattgaacagTTTCCCTCTCGATGAGCAAATGAACATGAAATCAGTAGTTGATTATTTTCAAGAAACGTATGGATTTACTATCAAATATTCTCATCTGCCTTGTCTTCAA
Basic information
species | Glycine max |
transcript | GLYMA04G21450.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G21450.1 (Glycine max), 3'ss of exon 7
lower sequence: LOC_Os06g39640.1 (Oryza sativa), 3'ss of exon 6
gtatgtcttttaactttagctggctg--aacttttacaatttacacaaatc--ctcctttgaaatgattttctcttc----tttttttctccccattgaacagTTTCCCTCTCGATGAGCAAATGAACATGAAATCAGTAGTTGATTATTTTCAAGAAACGTATGGATTTACTATCAAATATTCTCATCTGCCTTGTCTTCAA
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---gaccaaatagaccaaattaactatcaatatccatatttcatatacgttagctactaggcattgtgttaagctatggaactgattttgtttgttttaacagTTTCCCAATCGATGACCAAATGAACATGAAATCTGTCGTAGAGTATTTCAAGGAAATGTATGGCTTCACCATTCAGCATCCCCATCTTCCCTGCCTTCAG
upper sequence: GLYMA04G21450.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 6
---------gtatgtcttttaactttagctggctgaacttttacaatttacacaaatcctcctttgaaatgattttctcttctttttttctccccattgaacagTTTCCCTCTCGATGAGCAAATGAACATGAAATCAGTAGTTGATTATTTTCAAGAAACGTATGGATTTACTATCAAATATTCTCATCTGCCTTGTCTTCAA
| ||| |||| ||| | || ||||| ||| || || |||||| ||| ||| | | ||| || | | ||||||||||| | |||||||||||||||||||||||||| ||||| || ||||| || | |||||||||||| || |||||||||||| ||||| || |||
gtactgatattttgtattttgccttcttttaattgtcctttttttttttttttaa----tcttttgaagtgagtttaagtggtggtttcttctcattccaacagTTTCCCAGTTGATGAGCAAATGAACATGAAATCAGTTGTTGAGTACTTTCAGGAGATGTATGGATTTACCATTCGATATTCTCATCTACCTTGCCTCCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acacaaatcctcctttgaaatgattttctcttctttttttctccccattgaacagTTTCCCTCTCGATGAGCAAATGAACATGAAATCAGTAGTTGATTATTTTCAAGAAACGTATGGATTTACTATCAAATATTCTCATCTGCCTTGTCTTCAA
tgattttctcttcttt CT-rich tract
tttgaaatgatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtcttttaactttagctggctgaacttttacaatttacacaaatcctcctttgaaatgattttctcttctttttttctccccattgaacagTTTCCCTCTCGATGAGCAAATGAACATGAAATCAGTAGTTGATTATTTTCAAGAAACGTATGGATTTACTATCAAATATTCTCATCTGCCTTGTCTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA