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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatttcagtaataatagacaaagtttaacatcgacaggtttgacttcttccccctttctcattatgttttcttcttctgaaccaatctttatttttacagGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGCTTTTCCATTTAG

Basic information

species Glycine max
transcript GLYMA04G07870.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G07870.2 (Glycine max), 3'ss of exon 7
lower sequence: EFJ22017 (Selaginella moellendorffii), 3'ss of exon 7
aatttcagtaataatagacaaagtttaacatcgacaggtttgacttcttccccctttctcattatgttttcttcttctgaaccaatctttatttttacagGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGCTTTTCCATTTAG
                                             |  ||   | || ||  || | ||  | |   ||   | | | ||  ||| |||||||| |||| ||| |||| ||||| ||||| ||| | ||| ||||| ||||||||||||||||  | || ||| |||
--------------------------------------------gtactcatgcattatctataagcttggtccaattgtttctaacatttctttgacagGGTTCTGTTTGAGCTGATTTGGAGAGATTATTTTCGCTTTCTGTCAATGAAATATGGGAATTCTATATTTCATCTAG

upper sequence: GLYMA04G07870.2 (Glycine max), 3'ss of exon 7
lower sequence: EFJ18278 (Selaginella moellendorffii), 3'ss of exon 7
aatttcagtaataatagacaaagtttaacatcgacaggtttgacttcttccccctttctcattatgttttcttcttctgaaccaatctttatttttacagGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGCTTTTCCATTTAG
                                                       |   |||||| | |  || ||   | |  |||||   |||  ||||||| |||| ||| |||| ||||| ||||| ||| | ||| ||||| ||||||||||||||||  | || ||| |||
---------------------------------------------------gtactcagcattatctataattgtttctagc--atcttc--tttggcagGGTTCTGTTTGAGCTGATTTGGAGAGATTATTTTCGCTTTCTGTCAATGAAATATGGGAATTCTATATTTCATCTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttccccctttctcattatgttttcttcttctgaaccaatctttatttttacagGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGCTTTTCCATTTAG
                                        tctttattttt  CT-rich tract
                                      aatctttatttttaca  TA-rich tract