Sequence
atgc intronic sequence ATGC exonic sequence...aatttcagtaataatagacaaagtttaacatcgacaggtttgacttcttccccctttctcattatgttttcttcttctgaaccaatctttatttttacagGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGCTTTTCCATTTAG
Basic information
species | Glycine max |
transcript | GLYMA04G07870.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA04G07870.2 (Glycine max), 3'ss of exon 7
lower sequence: EFJ22017 (Selaginella moellendorffii), 3'ss of exon 7
aatttcagtaataatagacaaagtttaacatcgacaggtttgacttcttccccctttctcattatgttttcttcttctgaaccaatctttatttttacagGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGCTTTTCCATTTAG
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--------------------------------------------gtactcatgcattatctataagcttggtccaattgtttctaacatttctttgacagGGTTCTGTTTGAGCTGATTTGGAGAGATTATTTTCGCTTTCTGTCAATGAAATATGGGAATTCTATATTTCATCTAG
upper sequence: GLYMA04G07870.2 (Glycine max), 3'ss of exon 7
lower sequence: EFJ18278 (Selaginella moellendorffii), 3'ss of exon 7
aatttcagtaataatagacaaagtttaacatcgacaggtttgacttcttccccctttctcattatgttttcttcttctgaaccaatctttatttttacagGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGCTTTTCCATTTAG
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---------------------------------------------------gtactcagcattatctataattgtttctagc--atcttc--tttggcagGGTTCTGTTTGAGCTGATTTGGAGAGATTATTTTCGCTTTCTGTCAATGAAATATGGGAATTCTATATTTCATCTAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|14990988|gb|BI316661.1|BI316661EST: GTGAAGAGATATGAGAATGATAGACTAGCAAATAGTTCTACCTACTG GGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAA
genomic: GTGAAGAGATATGAGAATGATAGACTAGCAAATAGTTCTACCTACTGgtaagtggta ... atttttacagGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tcttccccctttctcattatgttttcttcttctgaaccaatctttatttttacagGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGCTTTTCCATTTAG
tctttattttt CT-rich tract
aatctttatttttaca TA-rich tract