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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgtttattgcatcatgtgaaacaaatgatgtacaataaatttgtcctaaatgttggtgttgaaaatctaataatagattattaattctttttttagGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATACGTTTTGACCTCCCAAAGACAGTTCGTAGTT

Basic information

species Glycine max
transcript GLYMA04G06060.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G06060.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0008g02170.t01 (Vitis vinifera), 3'ss of exon 5
gtattttgtttattgcatcatgtgaaacaaatgatgtacaataaatttgtcctaaatgttggtgttgaaaatctaat-aatagattatta--attctttttttagGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATACGTTTTGACCTCCCAAAGACAGTTCGTAGTT
                    | |   ||   | | |   |||  |||||    |  | || |  || ||| ||  || ||| ||| | ||  |  || | |  |||| || ||||||||| | ||||||||  ||||||| ||||||||||||||||||||||| ||||| || ||||||||||| || ||||| ||||||||||
-------------------gtatctgactccttagg---aattgatttgcaagaggttttagcatttaaactcccatcaattgatgagtattacactgtatgcagGTTAACCTATTATTTGCAACTGATGTGGTTGAGGAGGGAATTCATGTGCCAAACTGCTCCTGTGTTATTCGTTTTGACCTACCGAAGACTGTTCGTAGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcctaaatgttggtgttgaaaatctaataatagattattaattctttttttagGTCAATCTATTATTTACTACTGATGTACTTGAGGAAGGAATTCATGTGCCAAACTGCTCATGTGTGATACGTTTTGACCTCCCAAAGACAGTTCGTAGTT
                                     tattaat  putative branch site (score: 2)
                                       ttaattcttttttt  CT-rich tract
               tgttgaaaatctaata  TA-rich tract