Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttgagcttgcactgctgataagtccattgacttgtgatacgtggaaatcaaacaattgtgaagtttttggaatattacatatttattttgtgaaatttagGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTTTGTCAGCAGCAACAT

Basic information

species Glycine max
transcript GLYMA04G05900.2
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G05900.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os03g08070.1 (Oryza sativa), 3'ss of exon 7
-----ttgagcttgcactgctgataagtccattgacttgtgatacgtggaaatcaaacaattgt--gaagtttttggaatattacatatttattttgtgaaatttagGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTTTGTCAGCAGCAACAT
     |  |   |   ||  ||||||  | |   |  |   | | ||     |    | |      |||||||||  |||| |   ||||  | |||        ||||||||||||| ||| |||||||||| || || |||||||||||||||||||| |||||||||||||| || | ||| ||||| ||||| ||||||||||
gtaggtatactcttttctcttgataa--caaagaaactaaaagaagtttttttttctcgaccaaaagaagtttttataatact-tgtattgttcttgaa-----cagGTTGAGGATGCACAAGCACGTGAAGCTCCCGTTCAAAGGCTTGCAGATTCAATTGCAGGGCCATTTGTTTATACTGTTATGACATTGTCTGCAGCAACAT

upper sequence: GLYMA04G05900.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM5G855347_T02 (Zea mays), 3'ss of exon 2
ttgagcttgcactgctgataagtccattgacttgtgatacgtggaaatcaaacaattgtgaagtttttggaatattacatatttattttgtgaaatttagGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTTTGTCAGCAGCAACAT
             | ||  ||   ||     |  || |  | | ||| | ||   |    | | | ||  | |||   |||| |||  | ||||    ||||||||||||| ||| |||||||||| ||||| |||||||| |||||||| || ||||| |||||||| || | ||| ||||| ||| | ||| |||| |
-------------gttgtgaaacacaccctttgctgttgagagtaaagcgaagggtgaaaagggtgtttaactat---atatgtatcct-tgaa---cagGTTGAGGATGCCCAAGCACGTGAAGCTCCTGTTCAAAGGCTCGCAGATTCCATCGCAGGACCATTTGTGTATACTGTTATGACGTTGGCTGCAACAACCT

upper sequence: GLYMA04G05900.1 (Glycine max), 3'ss of exon 6
lower sequence: Vv04s0008g01960.t01 (Vitis vinifera), 3'ss of exon 8
ttgagcttgcactgctgataagtccattgacttgt-gatacgtggaaa--tcaaacaattgtgaagttttt--ggaatattacatatttattttgtgaaatttagGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTTTGTCAGCAGCAACAT
      ||  |      |||       || ||||| ||||| ||   |  | |||   ||  | ||||| |  ||  ||| | |  |||   |  | |  || |||||||||||||||||   |||| ||||||  |||||||||||||||||||||| || || |||||||| || | ||| |||||||| ||||||||||| |
-----tttaaagaatctatatacttgatggcttgttgatacatgaggagtttaaatgttttagtagtttctacggtttatgaaaccttttgctcataatcttcagGTTGAGGATGCTCAAGGCCGTGCAGCACCCATACAAAGGCTTGCAGATTCAATTGCTGGACCATTTGTCTATATTGTGATGACTTTATCAGCAGCAACTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatcaaacaattgtgaagtttttggaatattacatatttattttgtgaaatttagGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTTTGTCAGCAGCAACAT
                  tttttggaatattaca  TA-rich tract