1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ttcttcaccactcctgcggctctgtttttggtgtagtacagtctttatattttttactcatggtgcttactgttacaatttaatactgcatttgatatagGGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGACAAAGCACTGCCAGTGATGCTTTTGTACAAGAACGAGCGCCAACAGTAC
species | Glycine max |
transcript | GLYMA04G04530.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTC GGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGAEST: gi|192303058|gb|FG994176.1|FG994176
genomic: AA-GGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTCgtaagtttat ... tttgatatagGGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGA
EST: AAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAA-TGTGGCTC GGTGGGTGATTCAGTTGAAGAAAT-ATGAAAGGATTGTCTTGTTACTTCGAEST: gi|207812636|gb|GD783198.1|GD783198
genomic: AAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTCgtaagtttat ... tttgatatagGGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGA
EST: AAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTC GGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGTEST: gi|192303059|gb|FG994177.1|FG994177
genomic: AAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTCgtaagtttat ... tttgatatagGGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGA
EST: AAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTC GGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGA
genomic: AAAGGCATATTGAAAAATTATTTTGATTACAGATTGAAGAAATGTGGCTCgtaagtttat ... tttgatatagGGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGA
tatattttttactcatggtgcttactgttacaatttaatactgcatttgatatagGGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGACAAAGCACTGCCAGTGATGCTTTTGTACAAGAACGAGCGCCAACAGTAC
tgttacaatttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcttcaccactcctgcggctctgtttttggtgtagtacagtctttatattttttactcatggtgcttactgttacaatttaatactgcatttgatatagGGTGGGTGATTCAGTTGAAGAAATTATGAAAGGATTGTCTTGTTACTTCGACAAAGCACTGCCAGTGATGCTTTTGTACAAGAACGAGCGCCAACAGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC