1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aacctgctaattatttaaagtaaattatcttacagtaacactcagaatatctgttctagctttgcaaacttaatggtcataattatctgctactttgcagTGTAATGCTGTAAACAGTACTCGGAATTTGGCAAAACAAAGCCTATTTAGAGACCGTGACTTCAGCTCAGATCTGGTTTTTCCTTTGGTCAGCCTAGTTT
species | Glycine max |
transcript | GLYMA04G03240.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTGAGATTTAGCAGGCTCTTACAGATGACACTTGAGGAAGATTGCATTG TGTAATGCTGTAAACAGTACTCGGAATTTGGCAAAACAAAGCCTATTTAGAEST: gi|22932253|gb|BU549392.1|BU549392
genomic: ACTGAGATTTAGCAGGCTCTTACAGATGACACTTGAGGAAGATTGCATTGgtaagtatga ... tactttgcagTGTAATGCTGTAAACAGTACTCGGAATTTGGCAAAACAAAGCCTATTTAGA
EST: NNNGAGATTTAGCAGGCTCTTACAGATGACACTTGAGGAAGATTGCATTG TGTAATGCTGTAAACAGTACTCGGAATTTGGCAAAACAAAGCCTATTTAGA
genomic: ACTGAGATTTAGCAGGCTCTTACAGATGACACTTGAGGAAGATTGCATTGgtaagtatga ... tactttgcagTGTAATGCTGTAAACAGTACTCGGAATTTGGCAAAACAAAGCCTATTTAGA
aatatctgttctagctttgcaaacttaatggtcataattatctgctactttgcagTGTAATGCTGTAAACAGTACTCGGAATTTGGCAAAACAAAGCCTATTTAGAGACCGTGACTTCAGCTCAGATCTGGTTTTTCCTTTGGTCAGCCTAGTTT
acttaat putative branch site (score: 4)
ctacttt putative PPT
tcataattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacctgctaattatttaaagtaaattatcttacagtaacactcagaatatctgttctagctttgcaaacttaatggtcataattatctgctactttgcagTGTAATGCTGTAAACAGTACTCGGAATTTGGCAAAACAAAGCCTATTTAGAGACCGTGACTTCAGCTCAGATCTGGTTTTTCCTTTGGTCAGCCTAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
aacctgc
- - - - - - - - - - - - - - - - - - -acactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tatctgc