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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttaatggctccattttttatatgtttatattaatctctacatgttattatgtttttcttttccattgactaatgcttcgtaattttttgcactgctaaaatttacatgatccttctaaatgcctaatatataattgtgcacatgatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGGTTGCCTTAGATCTGATAAAGGCCCCTGGAAAAACCCTGATATATTCAAG

Basic information

species Glycine max
transcript GLYMA04G01220.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G01220.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g04470.t01 (Vitis vinifera), 3'ss of exon 8
gtacttaatggctccattttttatatgtttatattaatctctacatgttattatgtttttcttttccattgactaa-tgcttcgtaattttttgcactgctaaaatttacatgatccttctaaatgcctaatatataattgtgcacatgatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGGTTGCCTTAGATCTGATAAAGGCCCCTGGAAAAACCCTGATATATTCAAG
        |   | || ||  |  || | |  ||  |     | |  ||||| |||| | |||||  ||   |||| || || || |||  |||          || ||| ||     ||||||   ||     | |||| ||       || |||||||||||||||||||| || |||||||| || |||| ||||||||||||||||||  | |||||||| || || ||||| ||||| |||||||| |||
-------gtaattacagttgattcatctgt-catggag----atagtttatt-tgttctactttt--atccgctaagtgtttggtgattacttgtcacaactgcatctacctg---tctctaaacttctgg---aaaattttgggatcattgcagTGAGTTGCCAGAATTTCTTGGTGGTACCTGTACGTGTGCAGATCAGGGAGGTTGCCTCCGGTCTGATAAGGGACCATGGAATAACCCAGATATATTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192306575|gb|FG996237.1|FG996237
EST:     GTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAGTTATAGATGCCAG                         TGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGG
genomic: GTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAGTTATAGATGCCAGgtacttaatg ... catgatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGG
EST: gi|11274643|gb|BF324980.1|BF324980
EST:     GTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAGTTATAGATGCCAG                         TGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAG
genomic: GTTCTTGGAAACAAGTATCAAAGCAAATTGCTTGAAGTTATAGATGCCAGgtacttaatg ... catgatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaatttacatgatccttctaaatgcctaatatataattgtgcacatgatgaagTGAGTTGCCAGAATTTCTGGGAGGTACCTGCACTTGTGAAGATCAGGGAGGTTGCCTTAGATCTGATAAAGGCCCCTGGAAAAACCCTGATATATTCAAG
                            taatatataattgt  TA-rich tract