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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtatataactaaatcctaatttcctattcttaatctggttatttttatatatgatctataagctattttccttgaagGCAAGTTCAATCCATTTTTTGGGACTGGTAGACGTTTGGATGGAATCTCAATTCCTCCTGTTTATTCTTCACGGCCTTCCGATGTTCCAAATGTCAATTC

Basic information

species Glycine max
transcript GLYMA04G00980.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151397776|gb|EV267649.1|EV267649
EST:     TCCTTCCTTGGATTACAAGTTTACTACTGCAAGCAAAACACTAGACAAAG                         GCAAGTTCAATCCATTTTTTGGGACTGGTAGACGTTTGGATGGAATCTCAA
genomic: TCCTTCCTTGGATTACAAGGTTACTACTGCAAGCAAAACACTAGACAAAGgtgtatataa ... ttccttgaagGCAAGTTCAATCCATTTTTTGGGACTGGTAGACGTTTGGATGGAATCTCAA
EST: gi|12689044|gb|BG155389.1|BG155389
EST:     TCCTTCCTTGGATTACAAGGTTACTACTGCAAGCAAAACACTAGACAAAG                         GCAAGTTCAATCCATTTTTTGGGACTGGTAGACGTTTGGATGGAATCTCAA
genomic: TCCTTCCTTGGATTACAAGGTTACTACTGCAAGCAAAACACTAGACAAAGgtgtatataa ... ttccttgaagGCAAGTTCAATCCATTTTTTGGGACTGGTAGACGTTTGGATGGAATCTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctattcttaatctggttatttttatatatgatctataagctattttccttgaagGCAAGTTCAATCCATTTTTTGGGACTGGTAGACGTTTGGATGGAATCTCAATTCCTCCTGTTTATTCTTCACGGCCTTCCGATGTTCCAAATGTCAATTC
     tcttaat  putative branch site (score: 3)
                                        ctattttcctt  putative PPT
                ttatttttatatatga  TA-rich tract