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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatctagaacttcaattgggttgctgttgctctatgttctctgtagaatacttatgcattgtcactttgatgatatagTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCGGAAATTCTTATGGAAAAGCTTCCTGGAACCTTCTCT

Basic information

species Glycine max
transcript GLYMA04G00530.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G00530.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G38600.1 (Arabidopsis thaliana), 3'ss of exon 7
-----gtatctagaacttcaattgggttgctgttgctctatgttctctgtagaatacttatgcattgtcactttgatgatatagTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCGGAAATTCTTATGGAAAAGCTTCCTGGAACCTTCTCT
      | | ||  |  | ||||  |||    |  | | |   | | || | | | ||||    || |   | | |||   ||| ||||| |||||||| || ||||||||||| ||||| || |||||||||||  | ||| || | || ||| | |||||||||||||||| ||| ||||| 
gtatgctgtttacgatataaattaagtt----tgacacgacagtgtgtgca-acttcttacatttttttcttcttatg---tagCTTCTTGGCTGGTGTCTTGGCATGGAAAGACCCACAGGTCTTGGTTCCTGCTCTACAAGTTGCAGAGATTTTGATGGAAAAGCTTCCTGAAACATTCTCG

upper sequence: GLYMA04G00530.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv03s0038g02340.t01 (Vitis vinifera), 3'ss of exon 7
-------------------gtatctaga-acttcaattgggttgctgttgctctatgttctctgtagaatacttatgcattgtcactttgatgatatagTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCGGAAATTCTTATGGAAAAGCTTCCTGGAACCTTCTCT
                    ||| || | |  |   ||   |    | |  |   |    |      ||| |||||||||||| | |       | |||||||||||||||||| ||||||||||||||||| || || |||||||||||| | |||||  | || || || |||||||| |||||||| || || || 
gtacttgcatttcaaatatatatatacatatattttttatttcaaaggtagttactagaatgctggaaatgcttatgcattgttattacttgattctagTTTCTTAGCTGGTGTTTTAGCATGGAAAGATCCTCAAGTGTTGGTTCCTGCCCTCCAAATAGCTGAGATCCTGATGGAAAAACTTCCTGGGACGTTTTCC

upper sequence: GLYMA04G00530.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 7
gtatctagaacttcaattgggttgctgttgctctatgttctctg-tagaatacttatgcattgtcactttgatgatatagTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCGGAAATTCTTATGGAAAAGCTTCCTGGAACCTTCTCT
|||  ||    ||   |    |||     ||   || ||      |  ||||  |  |  || | | ||||    |  |||||| |||||||||| ||||||| ||| ||||| || |||||| |||||| | | |||||  | || ||||| |||||||||||||||  ||| ||||| 
gtacttat--ttttcttcttcttgtgagagcagaatttttgaaacttcaatatctgagt-ttatta-tttggctttccagTTTCCTAGCTGGTGTTTTAGCATCGAAGGATCCGCAAGTTTTGATTCCTGGCCTCCAAATGGCTGAGATTCTCATGGAAAAGCTTCCTAAAACTTTCTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgttgctctatgttctctgtagaatacttatgcattgtcactttgatgatatagTTTCTTAGCTGGTGTGTTAGCATGGAAAGATCCACATGTTTTGGTTCCTGCCTTGCAAATTTCGGAAATTCTTATGGAAAAGCTTCCTGGAACCTTCTCT
                                         ctttgat  putative branch site (score: 5)
                       aatacttat  TA-rich tract