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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatccttcgtcttagttttatatattaaatttactagttcattagcgctgtttcttgacataattcattctaagACAAAAAGAATGAGCACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAAGCGTTGCTCTTGATGCCATCCAGTACTCAAT

Basic information

species Glycine max
transcript GLYMA03G42280.1
intron # 7
splice site 3'
intron type U12 (go to U12 genes for details)

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G42280.1 (Glycine max), 3'ss of exon 7
lower sequence: AT4G01480.1 (Arabidopsis thaliana), 3'ss of exon 7
gtatccttcgtcttagttttatatattaaattt---------actagttcattagcgctgtttcttgacataattcattctaagACAAAAAGAATGAGCACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAAGCGTTGCTCTTGATGCCATCCAGTACTCAAT
||||||||        ||||| ||| |  |||          || | ||| ||   ||| | | |   || |||  |     |||||| ||||||||| ||||||| || ||||| |||||||||||||   |  |   |||| |||| ||||| |||||||||||
gtatccttaaaacctatttta-atacttgattaggaaacaaaaccatttcttttttgctatctttaaccaaaatataac---agACAAGAAGAATGAGAACAAGGAAGTTGCAGTGAATGATTTTCTACAACCTGGTCCTGCTATTGAAGCCATTCAGTACTCAAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatattaaatttactagttcattagcgctgtttcttgacataattcattctaagACAAAAAGAATGAGCACAAGGAGGTAGCAGTTAATGATTTTCTACCTGCAAGCGTTGCTCTTGATGCCATCCAGTACTCAAT
 tttcttgac  putative branch site 
                                            ttcattct  putative PPT
     ttaaatttactagtt  TA-rich tract