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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattgcatatcttatgatgaaatgttaatgtaatgtacggatgtattgcttctttcctcatgccactgttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGCTTTTCACCTACTCATCATTTGATAAATAAAGATAATCAGATAGATAGCA

Basic information

species Glycine max
transcript GLYMA03G42260.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19053378|gb|BM732045.1|BM732045
EST:     GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAG                         GGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
genomic: GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGgtatgattgc ... ttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
EST: gi|27426216|gb|CA937736.1|CA937736
EST:     GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAG                         GGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
genomic: GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGgtatgattgc ... ttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
EST: gi|31307657|gb|CD392860.1|CD392860
EST:     GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAG                         GGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
genomic: GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGgtatgattgc ... ttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
EST: gi|31462534|gb|CD404562.1|CD404562
EST:     CTGATTCTTGGAAGGAGGTCTCTGAAGAG                         GGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
genomic: CTGATTCTTGGAAGGAGGTCTCTGAAGAGgtatgattgc ... ttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
EST: gi|31472754|gb|CD414782.1|CD414782
EST:     AGGAGGTCTCTGAAGAG                         GGCCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
genomic: AGGAGGTCTCTGAAGAGgtatgattgc ... ttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
EST: gi|9903327|gb|BE612295.1|BE612295
EST:     GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGG                         GGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAG
genomic: GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGA-Ggtatgattgc ... ttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAG
EST: gi|31457956|gb|CD399984.1|CD399984
EST:     GATTCTTGGAAGGAGGTCTCTGAAGAG                         GGGC-GCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
genomic: GATTCTTGGAAGGAGGTCTCTGAAGAGgtatgattgc ... ttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
EST: gi|9258405|gb|BE346552.1|BE346552
EST:     GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAG                         GGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
genomic: GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGgtatgattgc ... ttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
EST: gi|31475604|gb|CD417632.1|CD417632
EST:     TGATTCTTGGAAGGAGGTCTCTGAAGAG                         GGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
genomic: TGATTCTTGGAAGGAGGTCTCTGAAGAGgtatgattgc ... ttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
EST: gi|31466877|gb|CD408905.1|CD408905
EST:     GTAGAAGCATTAGCAACCTTACTGATTCTTGTAAGGAGGTCTCTGAAGAG                         GGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
genomic: GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGgtatgattgc ... ttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
EST: gi|6915897|gb|AW397427.1|AW397427
EST:     GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAG                         GGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
genomic: GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGgtatgattgc ... ttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
EST: gi|23064253|gb|BU579026.1|BU579026
EST:     GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAG                         GGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
genomic: GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGgtatgattgc ... ttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
EST: gi|209727103|gb|BW655195.1|BW655195
EST:     GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAG                         GGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
genomic: GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGgtatgattgc ... ttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGC
EST: gi|193572210|gb|FK529983.1|FK529983
EST:     GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAG                         GGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCAC
genomic: GTAGAAGCATTAGCAACCTTACTGATTCTTGGAAGGAGGTCTCTGAAGAGgtatgattgc ... ttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaatgtaatgtacggatgtattgcttctttcctcatgccactgttattttcagGGGCGGCTTGCCTTTCAGGCTCTATTCTCCAGAGAGGTGTTGCCACAAAGCTTTTCACCTACTCATCATTTGATAAATAAAGATAATCAGATAGATAGCA
 tgttaat  putative branch site (score: 3)
                                             ttattttc  putative PPT
                                           tgttatttt  TA-rich tract