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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagaagcaaatttaagcttttctcccacctctctccacgggcagttgttttgactttgttttacctgaatgaattttctggacaaataaattatatctattttcaactttcattgtaaaagcttctttttctttttcactacattttctatgtagtgtcacacactgtcagtaattagaatcttgtacaaacagGTAGCGAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTATGCTCGCAAAAGCGTGTAAATCCATCTGTAGTTTCAGTTTCAGGGTTTG

Basic information

species Glycine max
transcript GLYMA03G41050.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|11687819|gb|BF595495.1|BF595495
EST:     TGTCAGCTCCTACAGTATATCCTCCACCCCCTCCTCCTCCACCACCAAAG                         GTAGCGAGAGAATGGATACCACTACCACCAGACAGAACAATTTGCCCCTTA
genomic: TGTCAGCTCCTACAGTATATCCTCCACCCCCTCCTCCTCCACCACCAAAGgtgaagaagc ... gtacaaacagGTAGCGAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTA
EST: gi|31469541|gb|CD411569.1|CD411569
EST:     CTCCACCCCCTCCTCCTCCACCACCAAAG                         GTAGCGAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTA
genomic: CTCCACCCCCTCCTCCTCCACCACCAAAGgtgaagaagc ... gtacaaacagGTAGCGAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTA
EST: gi|193425543|gb|FK388648.1|FK388648
EST:     GTTCAGCTCCTACAGTATATCCTCCACCCCCTCCTCCTCCACCACCAAAG                         GTAACGAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTA
genomic: G-TCAGCTCCTACAGTATATCCTCCACCCCCTCCTCCTCCACCACCAAAGgtgaagaagc ... gtacaaacagGTAGCGAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTA
EST: gi|208337537|gb|GE136403.1|GE136403
EST:     TGTCAGCTCCTACAGTATATCCTCCACCCCCTCCTCCTCCACCACCAAAG                         GTAGCGAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTA
genomic: TGTCAGCTCCTACAGTATATCCTCCACCCCCTCCTCCTCCACCACCAAAGgtgaagaagc ... gtacaaacagGTAGCGAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tacattttctatgtagtgtcacacactgtcagtaattagaatcttgtacaaacagGTAGCGAAAGAAGGGATACCACTACCACCAGACAGAACAATTTGCCCCTTATGCTCGCAAAAGCGTGTAAATCCATCTGTAGTTTCAGTTTCAGGGTTTG
                                taattagaat  TA-rich tract