1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...cttttcatcttcttaactatgaagtggtctacaactaaattgtcatagttcatgagtgcataattaattaattactgctactttgactggacctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGAAATTTACAGAAAGTGACTTGAGAGAAATTTCCGAGGCAGTTCCCATACA
species | Glycine max |
transcript | GLYMA03G40880.4 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CACCAAGGCAACGATGTTGTTCCTATTCCTG GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGAEST: gi|213590870|gb|DB975098.1|DB975098
genomic: CACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGAEST: gi|21600510|gb|BQ610841.1|BQ610841
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGAEST: gi|10233104|gb|BE802049.1|BE802049
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGAEST: gi|20811954|gb|BQ296432.1|BQ296432
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGAEST: gi|10254586|gb|BE822352.1|BE822352
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGAEST: gi|12688651|gb|BG154987.1|BG154987
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: AGGCAACGATGTTGTTCCTATTCCTG GAACAACTAAGATTAACAACCTGGATCAAAACATCGGTGCATTATCACTGAEST: gi|21677800|gb|BQ630151.1|BQ630151
genomic: AGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGAEST: gi|6666289|gb|AW277748.1|AW277748
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGAEST: gi|209721585|gb|BW671726.1|BW671726
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
EST: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTG GAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
genomic: GGCATTAGCTTGGGTACTTCACCAAGGCAACGATGTTGTTCCTATTCCTGgtgagtgaca ... acctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGA
tagttcatgagtgcataattaattaattactgctactttgactggacctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGAAATTTACAGAAAGTGACTTGAGAGAAATTTCCGAGGCAGTTCCCATACA
cctttac CT-rich tract
ataattaattaattac TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttttcatcttcttaactatgaagtggtctacaactaaattgtcatagttcatgagtgcataattaattaattactgctactttgactggacctttacagGAACAACTAAGATTAAGAACCTGGATCAAAACATCGGTGCATTATCACTGAAATTTACAGAAAGTGACTTGAGAGAAATTTCCGAGGCAGTTCCCATACA
- - -catcttc
- - - - - - - - - -tgaagtg
- - - - - - - - - - - - - gtctaca
- - - - - - - - - - - - - - - - - - - - - - - - -tcatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcataa