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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttttgatggtttctgcttatgttcactaactttttagcttctattttttgcctgactttcatttttcccgttattcacatttatcttttcacaacccagCTGTACTGTTTGCTCCCAACTAACTCGCTTCCCTCGGTACAATGATCCAATGAAG

Basic information

species Glycine max
transcript GLYMA03G40660.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724360|gb|BW658156.1|BW658156
EST:     CCACTTCCTTCCGAGACTCTTTATGGGGCTTCTAGGGTTGAACTCTATCG                         CTGTACTGTTTGCTCCCAACTAACTCGCTTCCCTC
genomic: CCACTTCCTTCCGAGACTCTTTATGGGGCTTCTAGGGTTGAACTCTATCGgtatgaccat ... cacaacccagCTGTACTGTTTGCTCCCAACTAACTCGCTTCCCTC
EST: gi|5510323|gb|AI856765.1|AI856765
EST:     CCACTTCCTTCCGAGACTCTTTATGGGGCTTCTAGGGTTGAACTCTATCG                         CTGTACTGTTTGCTCCCAACTAACTCGCTTCCCTCGGTACAATGATCCAAT
genomic: CCACTTCCTTCCGAGACTCTTTATGGGGCTTCTAGGGTTGAACTCTATCGgtatgaccat ... cacaacccagCTGTACTGTTTGCTCCCAACTAACTCGCTTCCCTCGGTACAATGATCCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgcctgactttcatttttcccgttattcacatttatcttttcacaacccagCTGTACTGTTTGCTCCCAACTAACTCGCTTCCCTCGGTACAATGATCCAATGAAG
     gcctgac  putative branch site (score: 3)
                                   tttatcttttc  putative PPT
                          ttattcacatttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttttgatggtttctgcttatgttcactaactttttagcttctattttttgcctgactttcatttttcccgttattcacatttatcttttcacaacccagCTGTACTGTTTGCTCCCAACTAACTCGCTTCCCTCGGTACAATGATCCAATGAAG

- -ttgatgg
- - - - - -ttctgct
- - - - - - - - - - - - cactaac
- - - - - - - - - - - - - - - - - - -gcttcta
- - - - - - - - - - - - - - - - - - - - - - - ttttgcc