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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctgtcatctttgggcttatcatttgatgttaccatcatggattattaattataataattctaattactttctcaagtaacaagatatttatcaagcttttaaaagttttaacttctgtgcagGATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGG

Basic information

species Glycine max
transcript GLYMA03G40220.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 3'ss of exon 5
gtaagcctgtcatctttgggcttatcatttgatgttaccatcatggattattaattataataattctaattactttctcaagtaacaagatatttatcaagcttttaaaagttttaacttctgtgcagGATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGG
                ||||  |   ||      ||      |   |||     |  |  |   ||||        | ||    ||| |    |||  || ||||      | | |  | || |||||||||| |||||| | |||||||| |||||||||||||| || || ||||||||||| |||||
----------------tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggtcta-------ccccagccgacagg----ttactaaactttctgtt-tctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGG

upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 3'ss of exon 5
gtaagcctgtcatctttgggcttatcatttgatgttaccatcatggattattaattataataattctaattactttctcaagtaacaagatatttatcaagcttttaaaagttttaacttctgtgcagGATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGG
                ||||  |   | |  |  ||    |  ||||  |  ||||  |    ||      |||  | ||    ||| |    |||  || ||||      | | |  | || |||||||||| |||||| | |||||||| |||||||||||||| || || ||||||||||| || ||
----------------tgggtgt-caaatccacatt----ttttgga--accaatttgatgtcttggtgggactaccccagcctacagg----ttactaaactttctgtt-tctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATCGG

upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 3'ss of exon 4
gtaagcctgtcatctttgggcttatcatttgatgttaccatcatggattattaattataataattctaattactttctcaagtaacaagatatttatcaagcttttaaaagttttaacttctgtgcagGATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGG
                ||||  |   | |  |  ||    |  ||||  |  ||||  |    ||      ||   | ||    ||| |    |||  || ||||      | | |  | || |||||||||| |||||| | |||||||| |||||||||||||  || || ||||||||||| || ||
----------------tgggtgt-caaatccacatt----ttttgga--accaattcgatgtcttggtgggacaaccccagcctacagg----ttactaaactttctgtt-tctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGG

upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 3'ss of exon 8
gtaagcctgtcatctttgggcttatcatttgatgttaccatcatggattattaattataataattctaattactttctcaagtaacaagatatttatcaagcttttaaaagttttaacttctgtgcagGATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGG
                ||||  |   | |  |  ||    |  ||||  |  ||||  |    ||      |||  | ||    ||| |    |||  || ||||      | | |  | || |||||||||| |||||| | |||||||| |||||||||||||  || || |||||||| || || ||
----------------tgggtgt-caaatccacatt----ttttgga--accaattcgatgtcttggtgggactaccccagcctacagg----ttactaaactttctgtt-tctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTGCTGATCGG

upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00500.t01 (Vitis vinifera), 3'ss of exon 7
gtaagcctgtcatctttgggcttatcatttgatgttaccatcatggattattaattataataattctaattactttctcaagtaacaagatatttatcaagcttttaaaagttttaacttctgtgcagGATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGG
                ||||  |   ||      ||      |   |||     |  |  |   ||||        | |     ||| |    |||  || ||||      | | |  | || |||||||||| |||||| | |||||||| |||||||||||||| || || ||||||||||| |||||
----------------tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggtcta-------cccccgccgacagg----ttactaaactttctgtt-tctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGG

upper sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 7
gtaagcctgtcatctttgggcttatcatttgatgttaccatcatggattattaattataataattctaattactttctcaagtaacaagatatttatcaagcttttaaaagttttaacttctgtgcagGATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGG
                ||||  |   | |  |  ||    |  ||||  |  ||||  |    ||      |||  | ||    ||| |    |||  || ||||      | | |  | || |||||||||| |||||| | |||||||| |||||||||||||  || || ||||||||||| || ||
----------------tgggtgt-caaatccacatt----ttttgga--accaattcgatgtcttggtgggactaccccagcctacagg----ttactaaactttctgtt-tctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttctcaagtaacaagatatttatcaagcttttaaaagttttaacttctgtgcagGATAATCCATTATTGATCGAGTGTTTTGATTTCAATAGCAGCGGCAATCATGTACTTATTGG
                                      ttttaac  putative branch site (score: 2)
                                            cttctgt  CT-rich tract
                atatttatcaagcttt  TA-rich tract