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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcctaccatctttgggcttaacatttaatgctacaagatagtatttatctagctttgaatatttttaacttctctgcagGATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGG

Basic information

species Glycine max
transcript GLYMA03G40210.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00540.t01 (Vitis vinifera), 3'ss of exon 5
------gtaagcctaccatctttgggcttaacat------ttaatg---ctaca--agatagtat-ttatctagctttgaatatttttaacttctctgcagGATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGG
        ||  | ||  | |||||    ||         ||  ||   ||||   ||     |  |||   | ||||   | || | |  | || |||||||||| |||||||| |||||||| |||||||||||||| || ||  |||||||||| |||||
tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggtctaccccagccgacaggttactaaactttctgt-ttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGG

upper sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00600.t01 (Vitis vinifera), 3'ss of exon 5
------gtaagcctaccatctttggg-----cttaacattt-------aatgctacaagatagtatttatctagctttgaatatttttaacttctctgcagGATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGG
        ||  | ||  | |||||       || |  | |       | | |  ||   ||    |||   | ||||   | || | |  | || |||||||||| |||||||| |||||||| |||||||||||||| || ||  |||||||||| || ||
tgggtgtcaaatccacattttttggaaccaatttgatgtcttggtgggactaccccagcctacaggttactaaactttctgt-ttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATCGG

upper sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00550.t01 (Vitis vinifera), 3'ss of exon 4
------gtaagcctaccatctttgggcttaacat------ttaatgctacaaga------tagtatttatctagctttgaatatttttaacttctctgcagGATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGG
        ||  | ||  | |||||    ||         ||  ||  ||||        ||    |||   | ||||   | || | |  | || |||||||||| |||||||| |||||||| |||||||||||||  || ||  |||||||||| || ||
tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggacaaccccagcctacaggttactaaactttctgt-ttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGG

upper sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00570.t01 (Vitis vinifera), 3'ss of exon 8
------gtaagcctaccatctttggg-----cttaacattt-------aatgctacaagatagtatttatctagctttgaatatttttaacttctctgcagGATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGG
        ||  | ||  | |||||       |  |  | |       | | |  ||   ||    |||   | ||||   | || | |  | || |||||||||| |||||||| |||||||| |||||||||||||  || ||  ||||||| || || ||
tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggactaccccagcctacaggttactaaactttctgt-ttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTGCTGATCGG

upper sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv14s0030g00500.t01 (Vitis vinifera), 3'ss of exon 7
------gtaagcctaccatctttgggcttaacat------ttaatg---ctacaa--gatagtat-ttatctagctttgaatatttttaacttctctgcagGATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGG
        ||  | ||  | |||||    ||         ||  ||   ||||    |     |  |||   | ||||   | || | |  | || |||||||||| |||||||| |||||||| |||||||||||||| || ||  |||||||||| |||||
tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggtctacccccgccgacaggttactaaactttctgt-ttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATAGTAGTGGGAATCATGTACTGATTGG

upper sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv12s0121g00080.t01 (Vitis vinifera), 3'ss of exon 7
------gtaagcctaccatctttggg-----cttaacattt-------aatgctacaagatagtatttatctagctttgaatatttttaacttctctgcagGATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGG
        ||  | ||  | |||||       |  |  | |       | | |  ||   ||    |||   | ||||   | || | |  | || |||||||||| |||||||| |||||||| |||||||||||||  || ||  |||||||||| || ||
tgggtgtcaaatccacattttttggaaccaattcgatgtcttggtgggactaccccagcctacaggttactaaactttctgt-ttctcatttgctttgcagGATAACCCATTAGTTATCGAGTGCTTTGATTTCAATACTAGTGGGAATCATGTACTGATCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaatgctacaagatagtatttatctagctttgaatatttttaacttctctgcagGATAATCCATTAGTGATCGAGTGTTTTGATTTCAATAGCAGCGGCGATCATGTACTTATTGG
                                      ttttaac  putative branch site (score: 2)
                                     tttttaacttctct  CT-rich tract
                 tatttatctagctttg  TA-rich tract