1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...tgaacccatgtttgctcttcacataacaatttggggtataccaaacacaggcgacaaaaaatctgactaaagtcaaactgtaaatttctcttgttttcagCCATTTCCTTTTTCTCTTTATGATTTGTTGGAGCAAAGTCTACCCCTGTATAATATGCTACGACGCCATGTGAAGAAAAAGTCATCTCTTCTGAGCCCTC
species | Glycine max |
transcript | GLYMA03G40000.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTCTGTACATAAATCTACTGGTTTTGAGAAACCAAGAAAGTATCCCCAG CCATTTCCTTTTTCTCTTTATGATTTGTTGGAGCAAAGTCTACCCCTGTATEST: gi|151396136|gb|EV266013.1|EV266013
genomic: GTCTGTACATAAATCTACTGGTTTTGAGAAACCAAGAAAGTATCCCCAGgtaagtggtt ... ttgttttcagCCATTTCCTTTTTCTCTTTATGATTTGTTGGAGCAAAGTCTACCCCTGTAT
EST: AGTCTGTACATAAATCTACTGGTTTTGAGAAACCAAGAAAGTATCCCCAG CCATTTCCTTTTTTCTCTTTATGATTTGTTGGAGCAAAGTCTACCCCTGTA
genomic: AGTCTGTACATAAATCTACTGGTTTTGAGAAACCAAGAAAGTATCCCCAGgtaagtggtt ... ttgttttcagCCATTTCCTTTTT-CTCTTTATGATTTGTTGGAGCAAAGTCTACCCCTGTA
cacaggcgacaaaaaatctgactaaagtcaaactgtaaatttctcttgttttcagCCATTTCCTTTTTCTCTTTATGATTTGTTGGAGCAAAGTCTACCCCTGTATAATATGCTACGACGCCATGTGAAGAAAAAGTCATCTCTTCTGAGCCCTC
gactaaa putative branch site (score: 2)
tttctcttgttttc putative PPT
acaaaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaacccatgtttgctcttcacataacaatttggggtataccaaacacaggcgacaaaaaatctgactaaagtcaaactgtaaatttctcttgttttcagCCATTTCCTTTTTCTCTTTATGATTTGTTGGAGCAAAGTCTACCCCTGTATAATATGCTACGACGCCATGTGAAGAAAAAGTCATCTCTTCTGAGCCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - -ccatgtt
- - - - - - - ctcttca
- - - - - - - - - - - - - - -tttgggg
- - - - - - - - - - - - - - - - - - - - ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaact