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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtatcatgcacaggtactagatatcatatttatttaggaaagatgaggtaaaatctcatatttctgttatttgctttttgtctaaattattagTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGA

Basic information

species Glycine max
transcript GLYMA03G39570.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151402798|gb|EV272611.1|EV272611
EST:     TAATTAACAGGGACAATCTGGTTAAACTACTTGCCAAACACACGGGAAAT                         TCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCGTATTATATGGATGCA
genomic: TAATTAACAGGGACAATCTGGTTAAACTACTTGCCAAACACACGGGAAATgtgagtatca ... aaattattagTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCGTATTATATGGATGCA
EST: gi|193348287|gb|FK309495.1|FK309495
EST:     TAATTAACAGGGACAATCTGGTTAAACTACTTGCCAAACACACGGGAAAT                         TCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCGTATTATATGGATGCA
genomic: TAATTAACAGGGACAATCTGGTTAAACTACTTGCCAAACACACGGGAAATgtgagtatca ... aaattattagTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCGTATTATATGGATGCA
EST: gi|207726960|gb|GD702912.1|GD702912
EST:     ATTAACAGGGACAATTCTTGGTTAAACTACTTGCCAAACACACGGGAAAT                         TCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCGTATTATATGGATGCA
genomic: ATTAACAGGGACAA-TC-TGGTTAAACTACTTGCCAAACACACGGGAAATgtgagtatca ... aaattattagTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCGTATTATATGGATGCA
EST: gi|193336968|gb|FK302404.1|FK302404
EST:     TAATTAACAGGGACAATCTGGTTAAACTACTTGCCAAACACACGGGAAAT                         TCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCGTATTATATGGATGCA
genomic: TAATTAACAGGGACAATCTGGTTAAACTACTTGCCAAACACACGGGAAATgtgagtatca ... aaattattagTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCGTATTATATGGATGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagatgaggtaaaatctcatatttctgttatttgctttttgtctaaattattagTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGA
                                         gtctaaa  putative branch site (score: 3)
                                    tttttgtctaaattat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtatcatgcacaggtactagatatcatatttatttaggaaagatgaggtaaaatctcatatttctgttatttgctttttgtctaaattattagTCAGAGGAAACAGTTGCTAATGTGATGAAGAGACCGTATTATATGGATGCAACAAGGGCAAAGGAATTTGGGGTCATTGACAGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA