1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagttttgagcctttacctgcctgcatgctatgtcttgaaatgtaatagcaacttaattgaacaagtgactggaattttattttttatttttgcatttgggtgtatatgcttgggaaattttttaaaattctgtattttcttaaaatgcagGCTAGGTAAGGATTTTCCGCTTAATAAAAATTCTGGTATTTTCCGTTGTGCGGTTTGCCAAGTGGACCAACCCCCTGGTGATGATGGTTTATCAGTGAAC
species | Glycine max |
transcript | GLYMA03G39260.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACCGAAAG GCTAGGTAAGGATTTTCCGCTTAATAAAAATTCTGGTATTTTCCGTTGTGCEST: gi|208192018|gb|GD990594.1|GD990594
genomic: GGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACCGAAAGgtgagttttg ... taaaatgcagGCTAGGTAAGGATTTTCCGCTTAATAAAAATTCTGGTATTTTCCGTTGTGC
EST: GGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACCGAAAG GCTAGGTAAGGATTTTCCGCTTAATAAAAATTCTGGTATTTTCCGTTGTGCEST: gi|207699822|gb|GD681557.1|GD681557
genomic: GGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACCGAAAGgtgagttttg ... taaaatgcagGCTAGGTAAGGATTTTCCGCTTAATAAAAATTCTGGTATTTTCCGTTGTGC
EST: GGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACCGAAAG GCTAGGTAAGG
genomic: GGTGTTGTGGAGGAGTTATTTGAAGAGGGTTCTGCAATGCTTACCGAAAGgtgagttttg ... taaaatgcagGCTAGGTAAGG
ttgggtgtatatgcttgggaaattttttaaaattctgtattttcttaaaatgcagGCTAGGTAAGGATTTTCCGCTTAATAAAAATTCTGGTATTTTCCGTTGTGCGGTTTGCCAAGTGGACCAACCCCCTGGTGATGATGGTTTATCAGTGAAC
ttctgtattttctt CT-rich tract
aaattttttaaaattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttgagcctttacctgcctgcatgctatgtcttgaaatgtaatagcaacttaattgaacaagtgactggaattttattttttatttttgcatttgggtgtatatgcttgggaaattttttaaaattctgtattttcttaaaatgcagGCTAGGTAAGGATTTTCCGCTTAATAAAAATTCTGGTATTTTCCGTTGTGCGGTTTGCCAAGTGGACCAACCCCCTGGTGATGATGGTTTATCAGTGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA