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...gtaccttagttttgtaaaattcatacttccttattttaatagtaacaaatgggatttttctgtgtacagattcctaaaatatactctttttgtattgcagACAAGTGCATCATTGAAATTTACTATATTGAATCCGAAAGGACGCATATGGACAATGGTAGCAGGAGGTGGTGCAAGTGTAATTTATGCTGATACG
species | Glycine max |
transcript | GLYMA03G38810.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAAGAATTCTGAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATAAG ACAAGTGCATCATTGAAATTTACTATATTGAATCCGAAAGGACGCATATGGEST: gi|193548970|gb|FK505377.1|FK505377
genomic: GAAGAATTCTGAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATAAGgtattttttt ... tgtattgcagACAAGTGCATCATTGAAATTTACTATATTGAATCCGAAAGGACGCATATGG
EST: AGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATAAG ACAAGTGCATCATTGAAATTTACTATATTGAATCCAAAAGGACGCATATGGEST: gi|151402134|gb|EV271947.1|EV271947
genomic: AGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATAAGgtattttttt ... tgtattgcagACAAGTGCATCATTGAAATTTACTATATTGAATCCGAAAGGACGCATATGG
EST: GAAGAATTCTGAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATAAG ACAAGTGCATCATTGAAATTTACTATATTGAATCCGAAAGGACGCATATGGEST: gi|37997687|gb|CF809276.1|CF809276
genomic: GAAGAATTCTGAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATAAGgtattttttt ... tgtattgcagACAAGTGCATCATTGAAATTTACTATATTGAATCCGAAAGGACGCATATGG
EST: GAAGAATTCTGAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATAAG ACAAGTGCATCATTGAAATTTACTATATTGAATCCGAAAGGACGCATATGGEST: gi|151407958|gb|EV277773.1|EV277773
genomic: GAAGAATTCTGAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATAAGgtattttttt ... tgtattgcagACAAGTGCATCATTGAAATTTACTATATTGAATCCGAAAGGACGCATATGG
EST: GAAGAATTCTGAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATA-G ACA-GTGCATCATTGAAATTTACTATAT-GAATCEST: gi|15202616|gb|BI425495.1|BI425495
genomic: GAAGAATTCTGAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATAAGgtattttttt ... tgtattgcagACAAGTGCATCATTGAAATTTACTATATTGAATC
EST: GAAGAATTCTGAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATAAG ACAAGTGCATCATTGAAATTTACTATATTGAATCCGAAAGGACGCATATGG
genomic: GAAGAATTCTGAGCCCTACAGAAAGCTTCATTCATTCCTTGGATGATAAGgtattttttt ... tgtattgcagACAAGTGCATCATTGAAATTTACTATATTGAATCCGAAAGGACGCATATGG
caaatgggatttttctgtgtacagattcctaaaatatactctttttgtattgcagACAAGTGCATCATTGAAATTTACTATATTGAATCCGAAAGGACGCATATGGACAATGGTAGCAGGAGGTGGTGCAAGTGTAATTTATGCTGATACG
tcctaaa putative branch site (score: 2)
tactcttttt putative PPT
taaaatatactctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaccttagttttgtaaaattcatacttccttattttaatagtaacaaatgggatttttctgtgtacagattcctaaaatatactctttttgtattgcagACAAGTGCATCATTGAAATTTACTATATTGAATCCGAAAGGACGCATATGGACAATGGTAGCAGGAGGTGGTGCAAGTGTAATTTATGCTGATACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT