1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...atgctaattgccaaatagtttgtatggtttcaaaactcagttaatttacattagtataagtttcaaggcatgctgataaatatttttttaatcattccagGGAGCACAGAAGAATCTGCCACAGATTTGTACTAATCACCTTGATCCCATCTCG
species | Glycine max |
transcript | GLYMA03G38650.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGGGCATACCCTTAGGAATTTATACAGTGGAGTTGTAGGATTGCAG GGAGCACAGAAGAATCTGCCACAGATTTGTACTAATCACCTTGATCCCATCEST: gi|192299205|gb|FG988663.1|FG988663
genomic: CTGGTGGGCATACCCTTAGGAATTTATACAGTGGAGTTGTAGGATTGCAGgtaagaaatc ... atcattccagGGAGCACAGAAGAATCTGCCACAGATTTGTACTAATCACCTTGATCCCATC
EST: CTGGTGGGCATACCCTTAGGAATTTATACAGTGGAGTTGTAGGATTGCAG GGAGCACAGAAGAATCTGCCACAGATTTGTACTAATCACCTTGATCCCATCEST: gi|207780109|gb|GD753038.1|GD753038
genomic: CTGGTGGGCATACCCTTAGGAATTTATACAGTGGAGTTGTAGGATTGCAGgtaagaaatc ... atcattccagGGAGCACAGAAGAATCTGCCACAGATTTGTACTAATCACCTTGATCCCATC
EST: CTGGTGGGCATACCCTTAGGAATTTATACAGTGGAGTTGTAGGATTGCAG GGAGCACAGAAGAATCTGCCACAGATTTGTACTAATCACCTTGATCCCATC
genomic: CTGGTGGGCATACCCTTAGGAATTTATACAGTGGAGTTGTAGGATTGCAGgtaagaaatc ... atcattccagGGAGCACAGAAGAATCTGCCACAGATTTGTACTAATCACCTTGATCCCATC
ttacattagtataagtttcaaggcatgctgataaatatttttttaatcattccagGGAGCACAGAAGAATCTGCCACAGATTTGTACTAATCACCTTGATCCCATCTCG
ttttaat putative branch site (score: 3)
tcattcc CT-rich tract
atgctgataaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgctaattgccaaatagtttgtatggtttcaaaactcagttaatttacattagtataagtttcaaggcatgctgataaatatttttttaatcattccagGGAGCACAGAAGAATCTGCCACAGATTTGTACTAATCACCTTGATCCCATCTCG
- - - - tgccaaa
- - - - - - - - - - tgtatgg
- - - - - - - - - - - - - - - caaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgct