1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tatctgcatgttactttgtattttccttccacccaagcagactgatgtcccatcttttggaaatttgttttaaaaatattctaaactattactgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTG
species | Glycine max |
transcript | GLYMA03G38340.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GGCAAGAAGGGCACACTGCTTTTGCTTCAAAGGAGGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATEST: gi|208322193|gb|GE122164.1|GE122164
genomic: GGCAAGAAGGGCACACTGCTTTTGCTTCAAAGGAGGAAGCAGATGCAGAGgtattacatc ... actgcttcagGTTCTTGAGATTCTGGAATTATAT
EST: GGCAAGAAGGGCACACTGCTTTTGCTTCAAAGGAGGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|207774360|gb|GD746254.1|GD746254
genomic: GGCAAGAAGGGCACACTGCTTTTGCTTCAAAGGAGGAAGCAGATGCAGAGgtattacatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: GGCAAGAAGGGCACACTGCTTTTGCTTCAAAGGAGGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|207841506|gb|GD811458.1|GD811458
genomic: GGCAAGAAGGGCACACTGCTTTTGCTTCAAAGGAGGAAGCAGATGCAGAGgtattacatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: GGCAAGAAGGGCACACTGCTTTTGCTTCAAAGGAGGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAEST: gi|19053180|gb|BM731847.1|BM731847
genomic: GGCAAGAAGGGCACACTGCTTTTGCTTCAAAGGAGGAAGCAGATGCAGAGgtattacatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
EST: GGCAAGAAGGGCACACTGCTTTTGCTTCAAAGGAGGAAGCAGATGCAGAG GTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
genomic: GGCAAGAAGGGCACACTGCTTTTGCTTCAAAGGAGGAAGCAGATGCAGAGgtattacatc ... actgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCA
tgtcccatcttttggaaatttgttttaaaaatattctaaactattactgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTG
ttctaaa putative branch site (score: 2)
ctgcttc putative PPT
ttttggaaatttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatctgcatgttactttgtattttccttccacccaagcagactgatgtcccatcttttggaaatttgttttaaaaatattctaaactattactgcttcagGTTCTTGAGATTCTGGAATTATATAGGCGTATATACGAAGAGTATTTGGCAGTTCCTGTCATAAAGGGTAAGAAAAGTGAGCTTGAGAAGTTTGCTGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - -gcatgtt
- - - - - - - - - - - - - ttccacc
- - - - - - - - - - - - - - - - -caagcag
- - - - - - - - - - - - - - - - - - - - actgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata