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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatactattatttgatgaacacattactggttctttaatttggttagctttaatgtaaaatttatggttggaaatgccttacataaaaaattgtatatgccttcttttttttataaaaaaaaggtagcttaaagttaaattctgtgtacgaaaattgtccaatgtatttatttacttgttttggtatgtacagGGCGTGGTAGAGGTTGATTCTAACAAGTGACAGGAACTACTTAATGTGTATCGGTAGCAACTTCACTGCCAGTGTTACCTGTGCATCCTTGCCTTGGCTT

Basic information

species Glycine max
transcript GLYMA03G37170.2
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19269369|gb|BM885625.1|BM885625
EST:     ACCTTGATTGGATGAGCTCCTAGCGAGCAAGAAATATCTTCAATGAACAA                         GGCGTGGTAGAGGTTGATTCTAACAAGTGACAGGAACTACTTAATGTGTAT
genomic: ACCTTGATTGGATGAGCTCCTAGCGAGCAAGAAATATCTTCAATGAACAAgtatactatt ... gtatgtacagGGCGTGGTAGAGGTTGATTCTAACAAGTGACAGGAACTACTTAATGTGTAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctgtgtacgaaaattgtccaatgtatttatttacttgttttggtatgtacagGGCGTGGTAGAGGTTGATTCTAACAAGTGACAGGAACTACTTAATGTGTATCGGTAGCAACTTCACTGCCAGTGTTACCTGTGCATCCTTGCCTTGGCTT
                      aatgtatttatttact  TA-rich tract