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...ataaaaaaattgtgttatctgaaagtcctgttgcatacaaaaaagttaaatttcatactgaaataaaattttggtagctaatttagagttttctctccagGTTGGACACTCTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCGCCAGAGAAG
species | Glycine max |
transcript | GLYMA03G35830.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: TTGACTTCATCAGAGAGGAATTGGAAAATGTTGAGATTCCTATATTACTG GTTGGACACTCTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCGEST: gi|192314239|gb|FK006977.1|FK006977
genomic: TTGACTTCATCAGAGAGGAATTGGAAAATGTTGAGATTCCTATATTACTGgtgggttctt ... ttctctccagGTTGGACACTCTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCG
EST: TTGACTTCATCAGAGAGGAATTGGAAAATGTTGAGATTCCTATATTACTG GTTGGACACTCTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCGEST: gi|6134681|gb|AW133074.1|AW133074
genomic: TTGACTTCATCAGAGAGGAATTGGAAAATGTTGAGATTCCTATATTACTGgtgggttctt ... ttctctccagGTTGGACACTCTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCG
EST: TTGACTTCATCAGAGAGGAATTGGAAAATGTTGAGATTCCTATATTACTG GTTGGACACTCTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCGEST: gi|151395111|gb|EV264982.1|EV264982
genomic: TTGACTTCATCAGAGAGGAATTGGAAAATGTTGAGATTCCTATATTACTGgtgggttctt ... ttctctccagGTTGGACACTCTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCG
EST: TTGACTTCATCAGAGAGGAATTGGAAAATGTTGAGATTCCTATATTACTG GTTGGACACTCTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCG
genomic: TTGACTTCATCAGAGAGGAATTGGAAAATGTTGAGATTCCTATATTACTGgtgggttctt ... ttctctccagGTTGGACACTCTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCG
ttaaatttcatactgaaataaaattttggtagctaatttagagttttctctccagGTTGGACACTCTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCGCCAGAGAAG
agctaat putative branch site (score: 3)
ttttctctcc putative PPT
tttcatactgaaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataaaaaaattgtgttatctgaaagtcctgttgcatacaaaaaagttaaatttcatactgaaataaaattttggtagctaatttagagttttctctccagGTTGGACACTCTATTGGTTCATACATATCTATTGAAATGTTCAAGAAGTCGCCAGAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- aaaaaaa
- - - - - - - - - ctgaaag
- - - - - - - - - - - - -tcctgtt
- - - - - - - - - - - - - - - - gcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - -catactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa