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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttgatttcaaatcacatgaaccaattttaaaaacaagttccctgtttagcaagtaaaactttgttgactttattcgttgtttcctatgtttcagGTCACTCCATTTGATGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCTGCATCGAACAAAGGCAACAATTATTGGTCTACTTGAGGCCAGTCGAGTG

Basic information

species Glycine max
transcript GLYMA03G34800.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G34800.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0007g03990.t01 (Vitis vinifera), 3'ss of exon 7
gtcttgatttcaaatcacatgaaccaattttaaaaacaagttccctgtttagcaagtaaaactttgttgactttat-tcgttgtttcctatgt----ttcagGTCACTCCATTTGATGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCTGCATCGAACAAAGGCAACAATTATTGGTCTACTTGAGGCCAGTCGAGTG
    |  |  |||| || |   ||    ||  |   ||| || |  | ||        |   ||| |   | | || ||| | |     ||||    |||||||||||||| || ||||| |||||||| || ||||||||||||||||| || ||||| || ||||| ||  | ||||| || || || | | || |||| 
--agttgtcccaaaacagacccacttggttgcagttcaactttctggattgctttcccatggtttctattcctcatgtcgctttaattaatgtatctttcagGTCACTCCACTTAATGGTTTTCTGGATCCTTTTTGAGAATGTCATGTCCCTACATCGGACCAAGGCTACCTTCATTGGACTGCTGGAAGGCGGTAGAGTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13788074|gb|BG650666.1|BG650666
EST:     GTTGGAACTCCAAG                         GTCACTCCATTTGATGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCT
genomic: GTTGGAACTCCAAGgtcttgattt ... tatgtttcagGTCACTCCATTTGATGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCT
EST: gi|57574731|gb|CX547706.1|CX547706
EST:     GTCTATATCCCTTCCATCATCACTATTCTAAATGCAGTTGGAACTCCAAG                         GTCACTCCATTTGATGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCT
genomic: GTCTATATCCCTTCCATCATCACTATTCTAAATGCAGTTGGAACTCCAAGgtcttgattt ... tatgtttcagGTCACTCCATTTGATGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccctgtttagcaagtaaaactttgttgactttattcgttgtttcctatgtttcagGTCACTCCATTTGATGGTCTTCTGGATTCTCTTTGAGAATGTCATGTCTCTGCATCGAACAAAGGCAACAATTATTGGTCTACTTGAGGCCAGTCGAGTG
                      tgttgac  putative branch site (score: 3)
                                     ttgtttcct  putative PPT
              taaaacttt  TA-rich tract