1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgaaggctgccaatggcaccatggaatttatgtactatgtattagtttgtaaaaatcaagtcatacaacttacaagaaatataaatttggttgtattcagAGAGACTTGGGAGCAGTGGGGAAGCAGTTGCTGATCTGAAACAGCTATTCTCCCTTGCTGAAAAAATTGGTTACTCTAAATGGCTTCAATTTGATGCATC
species | Glycine max |
transcript | GLYMA03G34050.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CCAGGAGCTATTGCAAGTCCTTTCTGTGAAGTCATTGACCGAGTTAGAAG AGAGACTTGGGAGCAGTGGGGAAGCAGTTGCTGATCTGAAACAGCTATTCTEST: gi|7588625|gb|AW704417.1|AW704417
genomic: CCAGGAGCTATTGCAAGTCCTTTCTGTGAAGTCATTGACCGAGTTAGAAGgttaaccctt ... ttgtattcagAGAGACTTGGGAGCAGTGGGGAAGCAGTTGCTGATCTGAAACAGCTATTCT
EST: CCAGGAGCTATTGCAAGTCCTTTCTGTGAAGTCATTGACCGAGTTAGAAG AGAGACTTGGGAGCAGTGGGGAAGCAGTTGCTGATCTGAAACAGCTATTCTEST: gi|6951687|gb|AW423755.1|AW423755
genomic: CCAGGAGCTATTGCAAGTCCTTTCTGTGAAGTCATTGACCGAGTTAGAAGgttaaccctt ... ttgtattcagAGAGACTTGGGAGCAGTGGGGAAGCAGTTGCTGATCTGAAACAGCTATTCT
EST: CCAGGAGCTATTGCAAGTCCTTTCTGTGAAGTCATTGACCGAGTTAGAAG AGAGACTTTGGAGCAGTGGGGAAGCAGTTGCTGATCTGAAACAGCTATTCT
genomic: CCAGGAGCTATTGCAAGTCCTTTCTGTGAAGTCATTGACCGAGTTAGAAGgttaaccctt ... ttgtattcagAGAGACTTGGGAGCAGTGGGGAAGCAGTTGCTGATCTGAAACAGCTATTCT
tttgtaaaaatcaagtcatacaacttacaagaaatataaatttggttgtattcagAGAGACTTGGGAGCAGTGGGGAAGCAGTTGCTGATCTGAAACAGCTATTCTCCCTTGCTGAAAAAATTGGTTACTCTAAATGGCTTCAATTTGATGCATC
aacttac putative branch site (score: 2)
aacttacaagaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaggctgccaatggcaccatggaatttatgtactatgtattagtttgtaaaaatcaagtcatacaacttacaagaaatataaatttggttgtattcagAGAGACTTGGGAGCAGTGGGGAAGCAGTTGCTGATCTGAAACAGCTATTCTCCCTTGCTGAAAAAATTGGTTACTCTAAATGGCTTCAATTTGATGCATC
- - - ctgccaa
- - - - - - - - - ccatgga
- - - - - - - - - - - - - - tatgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - aaatcaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcataca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagaaata