1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttttttatctgctactcttagtcttagattctcatcaattttcagttgcatcagtgacagattttatattgaatcttatatggttttttggttctcgtccagCTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAA
species | Glycine max |
transcript | GLYMA03G33680.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AATGTTAGACTTAGAGATACAGTGAACCAG CTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATTEST: gi|19053265|gb|BM731932.1|BM731932
genomic: AATGTTAGACTTAGAGATACAGTGAACCAGgttttttatc ... tctcgtccagCTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
EST: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGATACAGTGAACCAG CTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATTEST: gi|31471750|gb|CD413778.1|CD413778
genomic: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGATACAGTGAACCAGgttttttatc ... tctcgtccagCTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
EST: CTTCTGACCTTAAAAATACCCATGTTAGACTTAGAGATACAGTGAACCAG CTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
genomic: CTTCTGACCTTAAAAATACCAATGTTAGACTTAGAGATACAGTGAACCAGgttttttatc ... tctcgtccagCTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATT
gcatcagtgacagattttatattgaatcttatatggttttttggttctcgtccagCTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAA
ttctcgtcc CT-rich tract
attttatattgaatct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttttttatctgctactcttagtcttagattctcatcaattttcagttgcatcagtgacagattttatattgaatcttatatggttttttggttctcgtccagCTTCGATCCAGTCGAAACTTTTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCTTATTTGTACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT