1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gttatcaattgttaacttttctgaccttgactatcaccatttgttggtttttcaattaaataaaaaagtaggcatgggaaacctgctctgtattatgcattgtcgggttctgtctcactctggcaattgaatgctcttcagGCTGTGTTTATTGCAAGCAGGAAATCGATGATCCAACGGAAAGGAGTTCTTGAAACAACACATGAGATGCTTGAGAGGTTGGAAGCACATCTGAGGGCCA
species | Glycine max |
transcript | GLYMA03G33360.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGAAAACAACTTGAAGGAAATCAAAGGTTGAGTTGTTTTGGAAAGCCAG GCTGTGTTTATTGCAAGCAGGAAATCGATGATCCAACGGAAAGGAGTTCTTEST: gi|10256425|gb|BE824191.1|BE824191
genomic: GAGAAAACAACTTGAAGGAAATCAAAGGTGGAGTTGTTTTGGAAAGCCAGgttatcaatt ... tgctcttcagGCTGTGTTTATTGCAAGCAGGAAATCGATGATCCAACGGAAAGGAGTTCTT
EST: ATCAAAGGTGGAGTTGTTNTNGNAAGCCAG GCTGTGTTTATTGCAAGCAGGAAATCGATGATCCAACGGAAAGGAGTTCTTEST: gi|58017604|gb|CX704346.1|CX704346
genomic: ATCAAAGGTGGAGTTGTTTTGGAAAGCCAGgttatcaatt ... tgctcttcagGCTGTGTTTATTGCAAGCAGGAAATCGATGATCCAACGGAAAGGAGTTCTT
EST: GAGAAAACAACTTGAAGGAAATCAAAGGTGGAGTTGTTTTGGAAAGCCAG GCTGTGTTTATTGCAAGCAGGAAATCGATGATCCAACGGAAAGGAGTTCTTEST: gi|51334857|gb|CO978723.1|CO978723
genomic: GAGAAAACAACTTGAAGGAAATCAAAGGTGGAGTTGTTTTGGAAAGCCAGgttatcaatt ... tgctcttcagGCTGTGTTTATTGCAAGCAGGAAATCGATGATCCAACGGAAAGGAGTTCTT
EST: AGAAAACAACTTGAAGGAAATCAAAGNNNGAGTTGTTTTGGAAAGCCAG GCTGTGTTTATTGCAAGCAGGAAATCGATGATCCAACGGAAAGGAGTTCTTEST: gi|58014287|gb|CX701029.1|CX701029
genomic: AGAAAACAACTTGAAGGAAATCAAAGGTGGAGTTGTTTTGGAAAGCCAGgttatcaatt ... tgctcttcagGCTGTGTTTATTGCAAGCAGGAAATCGATGATCCAACGGAAAGGAGTTCTT
EST: AGAAAACAAC-TGAAGGGAAATCAAAGGTGGAGTTGTTTTGGAAAGCCAG GCTGTGTTTATTGCAAGCAGGAAATCGATGATCCAACGGAAAGGAGTTCTT
genomic: AGAAAACAACTTGAA-GGAAATCAAAGGTGGAGTTGTTTTGGAAAGCCAGgttatcaatt ... tgctcttcagGCTGTGTTTATTGCAAGCAGGAAATCGATGATCCAACGGAAAGGAGTTCTT
tctgtattatgcattgtcgggttctgtctcactctggcaattgaatgctcttcagGCTGTGTTTATTGCAAGCAGGAAATCGATGATCCAACGGAAAGGAGTTCTTGAAACAACACATGAGATGCTTGAGAGGTTGGAAGCACATCTGAGGGCCA
gtctcac putative branch site (score: 3)
tgctcttc putative PPT
aattgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatcaattgttaacttttctgaccttgactatcaccatttgttggtttttcaattaaataaaaaagtaggcatgggaaacctgctctgtattatgcattgtcgggttctgtctcactctggcaattgaatgctcttcagGCTGTGTTTATTGCAAGCAGGAAATCGATGATCCAACGGAAAGGAGTTCTTGAAACAACACATGAGATGCTTGAGAGGTTGGAAGCACATCTGAGGGCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG