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gtaaattaaacactcccaccatttcccacacggcaagaactcctcttttgatgttgaatattgaataaccacttattgcgctgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTATCGACATTACAATGATATCAAGGAGCTTCCTCCACATCGTTTAGCTGAAA
species | Glycine max |
transcript | GLYMA03G33000.5 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTTGCTTTCTTCGGGCCAACGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAGATAATTAGCTGTCTGTGCTGATGATCCEST: gi|151404690|gb|EV274504.1|EV274504
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatataaagGGGGAGAAAGATGATAAGATAATT-GCTGTCTGTGCTGATGATCC
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTATEST: gi|10236851|gb|BE805739.1|BE805739
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTATEST: gi|5510301|gb|AI856743.1|AI856743
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTATEST: gi|192296495|gb|FG989111.1|FG989111
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTATEST: gi|192295958|gb|FG989380.1|FG989380
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGGTTGATCAG GGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTATEST: gi|16105384|gb|BI893124.1|BI893124
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTATEST: gi|192324459|gb|FK015810.1|FK015810
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTATEST: gi|7925031|gb|AW831057.1|AW831057
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAN GGGGAGAAAGATGATAAGATAATTGCTGTCEST: gi|8827754|gb|BE211484.1|BE211484
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTC
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTATEST: gi|298199436|gb|HO042799.1|HO042799
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTAT
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAGATAACTGCTGTCTGTGCTGATGEST: gi|17022987|gb|BM094021.1|BM094021
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATG
EST: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAG GGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTAT
genomic: GTTGCTTTCTTCGGGCCAAAGCAATTGGTCTCATGCCCATGATTGATCAGgtaaattaaa ... tgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTAT
gaactcctcttttgatgttgaatattgaataaccacttattgcgctgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTATCGACATTACAATGATATCAAGGAGCTTCCTCCACATCGTTTAGCTGAAA
ttgaatattgaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaattaaacactcccaccatttcccacacggcaagaactcctcttttgatgttgaatattgaataaccacttattgcgctgatataaagGGGGAGAAAGATGATAAGATAATTGCTGTCTGTGCTGATGATCCCGAGTATCGACATTACAATGATATCAAGGAGCTTCCTCCACATCGTTTAGCTGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA