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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttctttcactccatcattttaggattccactatttatataggtgcaaaatgttacatttgaaagggttcaaaagtccaaatatgttgtcactaatcattgcctaattaaaaaaaaaatcatagGGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATCAATGCAAACCAAGTTCACATG

Basic information

species Glycine max
transcript GLYMA03G32920.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32920.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0040g03400.t01 (Vitis vinifera), 3'ss of exon 7
gtattttctttcactccatcattttaggattccactatttatataggtgcaaaatgttacatttgaaagggttcaaaagtccaaatatgttgtcactaatcattgcctaattaaaaaaaaaa------tcatagGGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATCAATGCAAACCAAGTTCACATG
                      |  |  || |||    | | ||    || | | || |  |    ||   |   |     ||      || ||| |    ||  | ||   ||||||  ||      |   ||||||||||||| |||||||| ||||| || ||||||||  |||||||||| | ||||||||||| | |||| |||||| |       || ||  || |||
---------------------gtaaatcatcccatctctca-atgaaagccaga-gtcatttgcccaaaaatcacagcaggcagtcgaatt-tcagtgggaatgacttaggaaaaaaattaaatttcttttcagGGAGCAGCCACCACATGTTACGTTGCGCTACACCCAAGTATGAAAGGTGTGAGTGGGAAGTACTATCTGGACTGCAATGAGATGGCCCCGAGCGCATATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9984821|gb|BE658929.1|BE658929
EST:     ACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAGgtattttctt ... aaaatcatagGGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|19269511|gb|BM885767.1|BM885767
EST:     ACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAGgtattttctt ... aaaatcatagGGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|16342663|gb|BI968258.1|BI968258
EST:     ACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAGgtattttctt ... aaaatcatagGGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|31463573|gb|CD405601.1|CD405601
EST:     ACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAGgtattttctt ... aaaatcatagGGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|31561914|gb|CD487752.1|CD487752
EST:     ACTTCCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ACTTCC-TCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAGgtattttctt ... aaaatcatagGGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|31473549|gb|CD415562.1|CD415562
EST:     ACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAGgtattttctt ... aaaatcatagGGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|31463063|gb|CD405091.1|CD405091
EST:     ACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAGgtattttctt ... aaaatcatagGGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
EST: gi|6201019|gb|AW153119.1|AW153119
EST:     ACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAG                         GGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA
genomic: ACTTCCTCAAGGTCTTTACCTTTTACATATGGAAGAACGTCCCCCAGgtattttctt ... aaaatcatagGGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaaagtccaaatatgttgtcactaatcattgcctaattaaaaaaaaaatcatagGGAGCAGCCACGACATGTTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATCAATGCAAACCAAGTTCACATG
                       taatcattgcctaatt  TA-rich tract