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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagcattattggcatgtactgacttacttttcagggaaaagacatgcttgatatcctttggttttccctacatccagtagaacttactatgccttacttggatgtagTCTCATTGCACAAGAGCGCCTGAATCGGATAACTCAGTTTATAAATGAGGTGACTCTCACTGGCAGCACTCCATCAACACCCAAATTAGATGATCAAATG

Basic information

species Glycine max
transcript GLYMA03G32580.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G32580.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv07s0005g04510.t01 (Vitis vinifera), 3'ss of exon 5
--------------gttagcattattggcatgtactgacttacttttcagggaaaagacatgcttgatatcctttggttttccctacatccagtagaacttactatgccttacttggatgtagTCTCATTGCACAAGAGCGCCTGAATCGGATAACTCAGTTTATAAATGAGGTGACTCTCACTGGCAGCACTCCATCAACACCCAAATTAGATGATCAAATG
               | |    | |  |  |||    ||| |||| |||  || ||       ||||  |   |   || | | ||  ||||    |  | ||||||  | ||||| ||| ||| | ||||||||||||||||||||||||||||| || ||| | |||  | |  ||||| |||    ||   |||||||| ||||   | ||||||||| |
gtttgtattgattattgattgctgtaagtttgtgagaact-acttgtcactgacaattagatattgaactagatgtattcttcatagttccaaactagttcactatgtttcacttgaatgcagTATAATTGCACAAGAGCGCCTGAATCGGATAACACATTTTGTCAATCTGATTTCTCTCCCTGATCACATCTCATCAACATCCAAGCAACATGATCAAACG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcctttggttttccctacatccagtagaacttactatgccttacttggatgtagTCTCATTGCACAAGAGCGCCTGAATCGGATAACTCAGTTTATAAATGAGGTGACTCTCACTGGCAGCACTCCATCAACACCCAAATTAGATGATCAAATG
                                       ccttactt  CT-rich tract
                               ttactat  TA-rich tract