1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...atatttaatggcactatgtaaattttttggagcatatttgacacatgcacagacatgaatactaatatttatgccgactttaccactgaattgttaacagTGGTATTGAGATCACTGAAGCTCTGAGGTTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAG
species | Glycine max |
transcript | GLYMA03G32350.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GAGAAAAATCTAAGTCGAATCGAAGAGATGTCATCTCTAGATTTGAAAAC TGGTATTGAGATCACTGAAGCTCTGAGGTTGCAGATGGAGGTTCAGAAGCGEST: gi|57576032|gb|CX549003.1|CX549003
genomic: GAGAAAAATCTAAGTCGAATCGAAGAGATGTCATCTCTAGATTTGAAAACgtaagtaaac ... ttgttaacagTGGTATTGAGATCACTGAAGCTCTGAGGTTGCAGATGGAGGTTCAGAAGCG
EST: GAGAAAAATCTAAGTCGAATCGAAGAGATGTCATCTCTAGATTTGAAAAC TGGTATTGAGATCACTGAAGCTTTGAGGTTGCAGATGGAGGTTCAGAAGCGEST: gi|58024609|gb|CX711350.1|CX711350
genomic: GAGAAAAATCTAAGTCGAATCGAAGAGATGTCATCTCTAGATTTGAAAACgtaagtaaac ... ttgttaacagTGGTATTGAGATCACTGAAGCTCTGAGGTTGCAGATGGAGGTTCAGAAGCG
EST: GAGAAAAATCTAAGTCGAATCGAAGAGATGTCATCTCTAGATTTGAAAAC TGGTATGGAGATCACTGAAGCTCTGAGGTTGCAGATGGAGGTTCAGAAGCG
genomic: GAGAAAAATCTAAGTCGAATCGAAGAGATGTCATCTCTAGATTTGAAAACgtaagtaaac ... ttgttaacagTGGTATTGAGATCACTGAAGCTCTGAGGTTGCAGATGGAGGTTCAGAAGCG
tgcacagacatgaatactaatatttatgccgactttaccactgaattgttaacagTGGTATTGAGATCACTGAAGCTCTGAGGTTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAG
tactaat putative branch site (score: 1)
atgaatactaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatttaatggcactatgtaaattttttggagcatatttgacacatgcacagacatgaatactaatatttatgccgactttaccactgaattgttaacagTGGTATTGAGATCACTGAAGCTCTGAGGTTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - -ctatgta
- - - - - - - - - - - - - - - - - - - - - -catgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - -catgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttatgcc