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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgctattgcaagttccaccatttcttcatatgttggtttgaagtgaagtcattaatgttactaatatgttcagGAGTTTCTCACAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATTATTCAAGGTTATGAGACACATTCGTTTAAGTCCAACTTTGATTCTTGGC

Basic information

species Glycine max
transcript GLYMA03G29280.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G29280.1 (Glycine max), 3'ss of exon 7
lower sequence: AT3G57410.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaatgctattgcaagttccaccatttcttcatatgttggtttgaagtgaagtcattaatgttactaatatgttcagGAGTTTCTCACAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATTATTCAAGGTTATGAGACACATTCGTTTAAGTCCAACTTTGATTCTTGGC
|||| ||||        |       ||   | ||   |  | ||| |    ||  | | | ||||     | | ||||| ||| |  | ||| |||| ||||| ||  | ||| | || ||| |  ||||||||||||||||| | ||||| || ||||| |||||||| |||||||
gtaaagctagaatcgtctaacttgcttagccttagaata-tctgaggattggttctcatttttaccttcctctacagGATTTTGTTGCTAGTGAAAATAGGCCAAAGGCAACACGCATAACCCGTGTTATTCAAGGTTATGAGCCCCATTCTTTCAAGTCTAACTTTGACTCTTGGC

upper sequence: GLYMA03G29280.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv08s0007g08690.t01 (Vitis vinifera), 3'ss of exon 7
--gtaatgctattgcaagttccaccat-ttcttcatatgttggtttgaagtgaagtcattaatgttactaatatgttcagGAGTTTCTCACAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATTATTCAAGGTTATGAGACACATTCGTTTAAGTCCAACTTTGATTCTTGGC
    ||   |||      ||   |||| ||||| ||||        ||| |    ||   ||| ||  |       |||||| ||| |  | || ||||| || || ||  | ||  |  | ||| |  |||||||||| |||||||||||||| || ||||||||||||||||||||||
gtagaagcttatcatccatttatccatgttctttatataacaac--gaactctcatctccaattttctt-----cctcagGAATTTGTTTCTAGCCAAAATAGACCAAAGGCAACTCGTGTAACCCGGGTTATTCAAGGGTATGAGACACATTCATTCAAGTCCAACTTTGATTCTTGGC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208172997|gb|GD972554.1|GD972554
EST:     GCCGGGTAACACAAGTTGAAGAACGAAAAGCAGCATGTCAAGCAGCTGAG                         GAGTTTCTCACAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATT
genomic: GCCGGGTAACACAAGTTGAAGAACGAAAAGCAGCATGTCAAGCAGCTGAGgtaatgctat ... atatgttcagGAGTTTCTCACAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATT
EST: gi|193660789|gb|FK600815.1|FK600815
EST:     TAACACAAGTTGAAGAACGAAAAGCAGCATGTCAAGCAGCTGAG                         GAGTTTCTCACAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATT
genomic: TAACACAAGTTGAAGAACGAAAAGCAGCATGTCAAGCAGCTGAGgtaatgctat ... atatgttcagGAGTTTCTCACAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catttcttcatatgttggtttgaagtgaagtcattaatgttactaatatgttcagGAGTTTCTCACAAGTCAAAAAAGGCCGAAATCTACAAGGATTACCAGAATTATTCAAGGTTATGAGACACATTCGTTTAAGTCCAACTTTGATTCTTGGC
                                        tactaat  putative branch site (score: 1)
                                attaatgttactaata  TA-rich tract