1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtacactctccatgcaccatgtcctaattgttgtttatacttaatagactccaaacatgtgaaactctgaggatggatgctaaaaaataaaagttcaaaccttaaaaaaaatggtacggtacattgttttccatttatttagccagctgttttccatttctattcttccagGTGTTTAATGAGATAAACAGCAGAGATATTGACAAGATAAACATATTCAGAGGCATGTTTGACAGCTGGATATTTATGGCGATAATTTTCGCCACCGCTG
species | Glycine max |
transcript | GLYMA03G29010.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CAACAAAAATACTCAACACGTTGATATTCAACTCCTTTGTATTTTGCCAG GTGTTTAATGAGATAAACAGCAGAGATATTGACAAGATAAACATATTCAGAEST: gi|12774122|gb|BG239049.1|BG239049
genomic: CAACAAAAATACTCAACACGTTGATATTCAACTCCTTTGTATTTTGCCAGgtacactctc ... attcttccagGTGTTTAATGAGATAAACAGCAGAGATATTGACAAGATAAACATATTCAGA
EST: CAACAAAAATACTCAACACGTTGATATTCAACTCCTTTGTATTTTGCCAG GTGTTTAATGAGATAAACAGCAGAGATATTGACAAGATAAACATATTCAGA
genomic: CAACAAAAATACTCAACACGTTGATATTCAACTCCTTTGTATTTTGCCAGgtacactctc ... attcttccagGTGTTTAATGAGATAAACAGCAGAGATATTGACAAGATAAACATATTCAGA
cggtacattgttttccatttatttagccagctgttttccatttctattcttccagGTGTTTAATGAGATAAACAGCAGAGATATTGACAAGATAAACATATTCAGAGGCATGTTTGACAGCTGGATATTTATGGCGATAATTTTCGCCACCGCTG
ctgttttccatttcta CT-rich tract
ttttccatttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacactctccatgcaccatgtcctaattgttgtttatacttaatagactccaaacatgtgaaactctgaggatggatgctaaaaaataaaagttcaaaccttaaaaaaaatggtacggtacattgttttccatttatttagccagctgttttccatttctattcttccagGTGTTTAATGAGATAAACAGCAGAGATATTGACAAGATAAACATATTCAGAGGCATGTTTGACAGCTGGATATTTATGGCGATAATTTTCGCCACCGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA