1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaaggccttttctgttaattttagatgaacttggaaaattattgtgatataacttggttagttgttcaatatgtcatattattgagacccaacaacttatcatgttttataaatatttctgaacttcttttttaaatccttgtttctattcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGATCTCGCCAGCAG
species | Glycine max |
transcript | GLYMA03G28320.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: AGGCTGCCAGGAAAAGCCGACTGAGGAAAAAG GCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAGEST: gi|120530210|gb|EH258344.1|EH258344
genomic: AGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggcctt ... attcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
EST: GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAG GCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAGEST: gi|8285582|gb|BE023141.1|BE023141
genomic: GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggcctt ... attcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
EST: CCGACTGAGGAAAAAG GCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAGEST: gi|193450264|gb|FK414358.1|FK414358
genomic: CCGACTGAGGAAAAAGgtaaggcctt ... attcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
EST: GGCTTGCTCAAAATCGTGAGGCTGCCGGGAAAAGCCGACTGAGGAAAAAG GCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
genomic: GGCTTGCTCAAAATCGTGAGGCTGCCAGGAAAAGCCGACTGAGGAAAAAGgtaaggcctt ... attcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAG
tgttttataaatatttctgaacttcttttttaaatccttgtttctattcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGATCTCGCCAGCAG
tccttgtttctattc CT-rich tract
tataaatatttctgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggccttttctgttaattttagatgaacttggaaaattattgtgatataacttggttagttgttcaatatgtcatattattgagacccaacaacttatcatgttttataaatatttctgaacttcttttttaaatccttgtttctattcattcagGCATATGTGCAACAATTAGAGAGCAGTAGGTTGAAACTGACCCAACTTGAGCAGGAGCTCCAGCGATCTCGCCAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT