1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...attttaattcaaggatagatatcttgcttatatacttgacaagtttattttattgctttagacgggtctaatatgaaatgttattgctgcattgttgaagATTCGTTGGTAGTGGAGTTCAAACAATATCAGCCCGAGAATAGAATGAGAAGAGCAATGTTGAATAGAAACGTAAATGTGGAACAGGGTTCTACATTTCG
species | Glycine max |
transcript | GLYMA03G28220.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
tattttattgctttagacgggtctaatatgaaatgttattgctgcattgttgaagATTCGTTGGTAGTGGAGTTCAAACAATATCAGCCCGAGAATAGAATGAGAAGAGCAATGTTGAATAGAAACGTAAATGTGGAACAGGGTTCTACATTTCG
gtctaat putative branch site (score: 3)
taatatgaaatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attttaattcaaggatagatatcttgcttatatacttgacaagtttattttattgctttagacgggtctaatatgaaatgttattgctgcattgttgaagATTCGTTGGTAGTGGAGTTCAAACAATATCAGCCCGAGAATAGAATGAGAAGAGCAATGTTGAATAGAAACGTAAATGTGGAACAGGGTTCTACATTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - cttgctt
- - - - - - - - - - - - - - - - - - tgacaag
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctgc