Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattaacagtaaggggtaaaataaaagtagcagcttgaattcatttgcattttatctgcagagctcatattttttattataaggctattaaatttttgtgccaacacagTTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAG

Basic information

species Glycine max
transcript GLYMA03G24630.1
intron # 7
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G24630.1 (Glycine max), 3'ss of exon 7
lower sequence: GRMZM2G406672_T02 (Zea mays), 3'ss of exon 7
gtattaacagtaaggggtaaaataaaagtagcagcttgaattcatttgcattttatctgca-gagctcatattttttattataaggctattaaatttttgtgccaacacagTTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAG
             | | ||   | | | |    |||| | ||||||  ||||||   |    |||    |||     || |||   |     |||  ||||        ||||||||||||||||||| |||||||| |||| ||| || ||||| || ||||| || ||  | ||||| ||||| ||||| |||
-------------gtgctattttgacattctatgcttcatttcattaacattttcattatgtgaggctttatccgaaatcatatcac-----aatacttgtatttttgtagTTTGAAGATTTCCAAAGTAAATGGGCCTTTAGGTTGTTGCAGCGTTACAGAAAGACTTATCGCATGTTTAATGATGATGTTCAG

upper sequence: GLYMA03G24630.1 (Glycine max), 3'ss of exon 7
lower sequence: AT2G13560.1 (Arabidopsis thaliana), 3'ss of exon 7
gtattaacagtaaggggtaaaataaaagtagcagcttgaattcatttgcattttatctgcagagctcatattttttattataaggctattaaatttttgtgccaac-acagTTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAG
                              | | |    || | ||   |  |     | | | |  || ||| ||||||| |  ||  ||||| ||| | | | | ||||||||| |||||||| ||||| ||||| || || ||||| ||| ||||||||   |||||| ||||||||||||| ||||| |||
------------------------------gtaacc--gatgc-ttcatagatctctggtatatcaaatgtttcttattatgaaact--taaatgttttttctacccacagTTTGAGGATTTCCAGAGCAAGTGGGCTTTCAAATTATTGCAGAGGTATAGATGCACCTACCGAATGTTCAATGATGATGTCCAG

upper sequence: GLYMA03G24630.1 (Glycine max), 3'ss of exon 7
lower sequence: Vv15s0021g00500.t01 (Vitis vinifera), 3'ss of exon 7
gtattaacagtaaggggtaaaataaaagtagcagcttgaattcatttgcattttatctgcagagctcatattttttatt-ataaggctattaaatttttgtgccaacacagTTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAG
                              | |     || |  || |   | |  | ||     ||| ||  |  | | |     |  |  |  || |||||      |||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||| ||||||||||||||| || || ||||| |||
------------------------------gtaatgctaaattgttaga--tatgcccgcta---tcagatagtcaactcactgttccttggagattctgtgc------agTTTGAAGATTTCCAAAGCAAGTGGGCCTTTAAGTTATTGCAGCGTTATAGAAGTACCTACAGAATGTTTAACGATGATGTACAG

upper sequence: GLYMA03G24630.1 (Glycine max), 3'ss of exon 7
lower sequence: EFJ21048 (Selaginella moellendorffii), 3'ss of exon 7
gtattaacagtaaggggtaaaataaaagtagcagcttgaattcatttgcattttatctgcagagctcatattttttattataaggctattaaatttttgtgccaacacagTTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAG
                                                 ||  ||| |    |  ||     |||||||   |   |  |       | ||      |||||||||||||||||   ||||||||| || ||| | |||||||||||| |||||   ||| | ||||| || || ||||| |||
----------------------------------------------gtaatcatatttttgtatttctatccttttattgcgatcatgctg------tatgtggtggcagTTTGAAGATTTCCAGTCCAAATGGGCCTTCAAGCTTTTACAGCGGTATCGAAATCATTACCGGATGTTTAACGATGATGTCCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19270517|gb|BM886773.1|BM886773
EST:     ATGAATTTATGGATGCTGTCTTTACTCGCTGGCCAAATGTGATTGTGCAG                         TTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGA
genomic: ATGAATTTATGGAGGCTGTCTTTACTCGCTGGCCAAATGTGATTGTGCAGgtattaacag ... gccaacacagTTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGA
EST: gi|9264573|gb|BE352720.1|BE352720
EST:     GGCTGTCTTTACTCGCTGGCCAAATGTGATTGTGCAG                         TTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGA
genomic: GGCTGTCTTTACTCGCTGGCCAAATGTGATTGTGCAGgtattaacag ... gccaacacagTTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGA
EST: gi|19345893|gb|BM890773.1|BM890773
EST:     ATGAATTTATGGAGGCTGTCTTTACTCGCTGGCCAAATGTGATTGTGCAG                         TTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGA
genomic: ATGAATTTATGGAGGCTGTCTTTACTCGCTGGCCAAATGTGATTGTGCAGgtattaacag ... gccaacacagTTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGA
EST: gi|13788373|gb|BG650965.1|BG650965
EST:     ATGAATTTATGGAGGCTGTCTTTACTCGCTGGCCAAATGTGATTGTGCAG                         TTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGA
genomic: ATGAATTTATGGAGGCTGTCTTTACTCGCTGGCCAAATGTGATTGTGCAGgtattaacag ... gccaacacagTTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGA
EST: gi|17519704|gb|BM188746.1|BM188746
EST:     ATGAATTTATGGAGGCTGTCTTTACTCGCTGGCCAAATGTGATTGTGCAG                         TTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGA
genomic: ATGAATTTATGGAGGCTGTCTTTACTCGCTGGCCAAATGTGATTGTGCAGgtattaacag ... gccaacacagTTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgcagagctcatattttttattataaggctattaaatttttgtgccaacacagTTTGAAGATTTCCAAAGCAAATGGGCATTTAAGTTATTACAGCGGTATAGAAATACCTACAGAATGTTCAATGACGATGTGCAG
          tcatattttttattat  TA-rich tract